diff --git a/README.md b/README.md index 4cbfaa3..2cab7e3 100755 --- a/README.md +++ b/README.md @@ -3,13 +3,13 @@ # modPhred modPhred is a pipeline for detection, annotation and visualisation of DNA/RNA modifications -from raw ONT data. The pipeline consists of four steps / modules: +from raw ONT data. The pipeline consists of four steps / modules: 1. **modEncode**: Encoding modification probabilities in FastQ (mod_encode.py) 2. **modAlign**: Build alignments keepind modification information in BAMs (mod_align.py) 3. **modReport** Extraction of RNA modification information (bedGraph) and QC reports (mod_report.py) -4. **modAnalysis**: Plotting venn diagrams (mod_plot.py), co-occurrence of modifications(mod_correlation.py) and per-read clustering based on modification profiles (mod_cluster.py) +4. **modAnalysis**: Plotting venn diagrams (mod_plot.py), co-occurrence of modifications (mod_correlation.py) and per-read clustering based on modification profiles (mod_cluster.py) For more information, please visit full documentation at https://modphred.readthedocs.io.