environment.yml

name: pancancer-classifier
channels:
- conda-forge
- bioconda
dependencies:
- conda-forge::python=3.6.5
- conda-forge::jupyter=1.0.0
- conda-forge::ipykernel=4.8.1
- conda-forge::r-irkernel=0.8.11
- conda-forge::nb_conda_kernels=2.1.0
- conda-forge::widgetsnbextension=2.0.0
- conda-forge::numpy=1.14.3
- conda-forge::pandas=0.23.0
- conda-forge::scikit-learn=0.19.1
- conda-forge::seaborn=0.8.1
- conda-forge::statsmodels=0.9.0
- conda-forge::numexpr=2.6.5
- conda-forge::plotnine=0.3.0
- conda-forge::dask-searchcv=0.2.0
- conda-forge::r-ggplot2=3.0.0
- conda-forge::r-dplyr=0.7.6
- conda-forge::r-readr=1.1.1
- conda-forge::r-optparse=1.4.4
- conda-forge::r-pheatmap=1.0.10
- conda-forge::r-ggpmisc=0.3.0
- conda-forge::r-ggrepel=0.8.0
- conda-forge::r-cowplot=0.9.3
- conda-forge::r-hmisc=4.0_3
- bioconda::biopython=1.70
- pip:
  - git+https://github.com/greenelab/tybalt@1b4ad8f8032c66b60c2397307f8d396099946416