environment.yml

name: cbm101
dependencies:
- python>=3.6.0
- pip
- ipython
- ipywidgets
- jupyter
- git
- numpy
- matplotlib
- pandas
- scikit-learn>=0.20
- ipykernel
- conda-forge::jupyter_contrib_nbextensions
- conda-forge::jupyterlab
- conda-forge::statsmodels
- conda-forge::biopython
- conda-forge::graphviz
- conda-forge::dcm2niix
- conda-forge::nxviz
- conda-forge::umap-learn
- scipy
- seaborn
- imageio
# - rpy2
- simplegeneric
- tzlocal
- pytables
- openpyxl
- anaconda::basemap
- pip:
  - pip
  - opencv-python
  - scikit-image
  - Pillow
  - SimpleITK
  - kaggle
#  - graphviz
  - networkx
  - pandas-profiling
  - xlrd
  - nibabel
  - nilearn
  - joblib
  - dipy
  - eli5
  - pdpbox
  - wand
  - python-louvain
  - pyradiomics
  - fury
  - plotly
#  - tensorflow==2.0.0-beta1
  - tensorflow
  - pydot
  - pypdb
  - GEOparse
  - bctpy
  - xgboost
  - albumentations
#  - pandas_ml  (not compatible with pandas 0.25.0)
# - python-igraph (needs a workaround for Windows)
# pip install .\python_igraph-0.7.1.post6-cp37-cp37m-win_amd64.whl