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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 4

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 232 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 4 5 5 Updated Dec 12, 2024
  • Gaea Public

    Register genomics data in EGA

    oicr-gsi/Gaea’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 12, 2024
  • kallisto Public

    Quantifying abundances of transcripts from RNA-Seq data

    oicr-gsi/kallisto’s past year of commit activity
    0 0 0 1 Updated Dec 11, 2024
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 2 Updated Dec 11, 2024
  • mutect2Consensus Public

    The Mutect2Consensus workflow will process umiConsensus outputs for the tumour data through mutect2 in tumour only mode to call variants then use information from the matched normal to identify likely germline variants.

    oicr-gsi/mutect2Consensus’s past year of commit activity
    WDL 0 0 0 0 Updated Dec 11, 2024
  • optitype Public

    Workflow for HLA genotyping prediction with optitype

    oicr-gsi/optitype’s past year of commit activity
    WDL 0 0 0 1 Updated Dec 11, 2024
  • msisensor Public

    msisensor-pro workflow

    oicr-gsi/msisensor’s past year of commit activity
    WDL 0 0 0 1 Updated Dec 10, 2024
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 1 Updated Dec 9, 2024
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 1 Updated Dec 6, 2024
  • nabu Public

    QC tracking for files via a web service

    oicr-gsi/nabu’s past year of commit activity
    JavaScript 0 MIT 0 2 0 Updated Dec 6, 2024
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