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CHANGELOG.md

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Changelog

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

This file is updated automatically as described in Unreleased Changes.

[1.17.1] - 2024-11-22

Fixed

  • Field on cardea detailed cases must be able to handle null values

[1.17.0] - 2024-11-21

Added

  • Field qcFailed on sequencing items in shesmu detailed cases

[1.16.0] - 2024-11-07

Added

  • Omitted run samples in Dimsum case data

[1.15.0] - 2024-10-24

Added

  • Shesmu Detailed Cases endpoint

[1.14.0] - 2024-08-06

Added

  • Sample/library DV200 field

[1.13.0] - 2024-06-13

Added

  • Sample transferDate field for extractions
  • Test fields for extraction TAT breakdown of days spent on preparation, QC, and transfer

[1.12.0] - 2024-06-06

Added

  • Test fields for library qualification and full-depth sequencing TAT breakdown of days spent on loading, sequencing, and QC
  • Run start date field

[1.11.0] - 2024-05-08

Changed

  • The requisition-cases endpoint now returns a set of cases, which may have different assays
  • A requisition may now have multiple assays; the single assayId fields on requisitions and samples have been changed to sets

Fixed

  • Missing requisition and assay information for omitted samples

[1.10.0] - 2024-04-10

Added

  • Deliverable-type-level turn-around time fields
  • Project analysisReviewSkipped field

[1.9.1] - 2024-03-13

Fixed

  • Missing (null) completedDates in shesmu-cases endpoint

[1.9.0] - 2024-03-11

Added

  • New metrics for cfMeDIPs assays

[1.8.0] - 2024-02-28

Added

  • QC notes to deliverables

Changed

  • Case deliverables now contain all QC information for analysis review, release approval, and release

Removed

  • Requisition QCs

[1.7.0] - 2024-01-03

Added

  • Case deliverables
  • Assay test field to specify if library qualification is skipped

Fixed

  • Loading samples that have no requisition

[1.6.0] - 2023-11-16

Added

  • Days spent per QC step at case and test levels
  • Requisition pause status and reason
  • Assay turn-around time targets

Changed

  • Case start date provided by QC-Gate-ETL (based on latest sample receipt) will be used

[1.5.0] - 2023-09-19

Changed

  • Renamed steps:
    • Informatics Review -> Analysis Review
    • Draft Report -> Release Approval
    • Final Report -> Release

[1.4.0] - 2023-08-18

Changed

  • Data types to work with Dimsum data parsing and loading

[1.3.0] - 2023-08-08

Added

  • Sample QC Note field
  • capability for Jackson parsing for data models using Builder notation

[1.2.0] - 2023-07-31

Added

  • Preliminary coverage for full-depth WG libraries, and preliminary clusters for full-depth WT libraries
  • isStopped() function in Case and Test library design code field
  • Sample median insert size field

Fixed

  • data for the wrong donor could be included in Informatics Review metrics on the Case QC Report
  • Only run-library IUSes are included in shesmu-cases limsIds field

[1.1.0] - 2023-05-19

Added

  • Add /requisition-cases/{requisitionName} endpoint

Fixed

  • Return list of case IDs instead of count of cases in summary by run

[1.0.1] - 2023-05-10

Fixed

  • Convert /shesmu-cases completedDate to Instant for better Shesmu compatibility

[1.0.0] - 2023-05-08

Added

  • Add /shesmu-cases endpoint

Fixed

  • OpenAPI URLs now displays correct URL scheme
  • Forward headers for correct URL display in OpenAPI docs

Unreleased

  • Copied the Dimsum project and modified it to serve as the basis for the Cardea project