diff --git a/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml b/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
index c13e8859d1935..ef60117de0602 100644
--- a/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
+++ b/kubernetes/apps/flux-system/flux-operator/app/helmrelease.yaml
@@ -9,7 +9,7 @@ spec:
   chart:
     spec:
       chart: flux-operator
-      version: 0.12.0
+      version: 0.13.0
       sourceRef:
         kind: HelmRepository
         name: controlplaneio
diff --git a/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml b/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
index b6d05e1f656d4..8dec3778f8ff1 100644
--- a/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
+++ b/kubernetes/apps/flux-system/flux-operator/instance/helmrelease.yaml
@@ -9,7 +9,7 @@ spec:
   chart:
     spec:
       chart: flux-instance
-      version: 0.12.0
+      version: 0.13.0
       sourceRef:
         kind: HelmRepository
         name: controlplaneio
diff --git a/kubernetes/bootstrap/apps/helmfile.yaml b/kubernetes/bootstrap/apps/helmfile.yaml
index 48c7377c48299..60f8fd7b22c07 100644
--- a/kubernetes/bootstrap/apps/helmfile.yaml
+++ b/kubernetes/bootstrap/apps/helmfile.yaml
@@ -59,7 +59,7 @@ releases:
   - name: flux-operator
     namespace: flux-system
     chart: oci://ghcr.io/controlplaneio-fluxcd/charts/flux-operator
-    version: 0.12.0
+    version: 0.13.0
     values:
       - ../apps/flux-system/flux-operator/app/helm-values.yaml
     needs:
@@ -68,7 +68,7 @@ releases:
   - name: flux-instance
     namespace: flux-system
     chart: oci://ghcr.io/controlplaneio-fluxcd/charts/flux-instance
-    version: 0.12.0
+    version: 0.13.0
     wait: false
     values:
       - ../apps/flux-system/flux-operator/instance/helm-values.yaml