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sessionInfo.yaml
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sessionInfo.yaml
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R.version:
platform: x86_64-pc-linux-gnu
arch: x86_64
os: linux-gnu
system: x86_64, linux-gnu
status: ''
major: '4'
minor: '3.1'
year: '2023'
month: '06'
day: '16'
svn rev: '84548'
language: R
version.string: R version 4.3.1 (2023-06-16)
nickname: Beagle Scouts
platform: x86_64-pc-linux-gnu (64-bit)
locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
tzone: Europe/Zurich
tzcode_type: system (glibc)
running: Red Hat Enterprise Linux
RNGkind:
- Mersenne-Twister
- Inversion
- Rejection
basePkgs:
- stats
- graphics
- grDevices
- utils
- datasets
- methods
- base
otherPkgs:
ggplot2:
Package: ggplot2
Version: 3.4.3
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Authors@R: |-
c(
person("Hadley", "Wickham", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0003-4757-117X")),
person("Winston", "Chang", role = "aut",
comment = c(ORCID = "0000-0002-1576-2126")),
person("Lionel", "Henry", role = "aut"),
person("Thomas Lin", "Pedersen", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-5147-4711")),
person("Kohske", "Takahashi", role = "aut"),
person("Claus", "Wilke", role = "aut",
comment = c(ORCID = "0000-0002-7470-9261")),
person("Kara", "Woo", role = "aut",
comment = c(ORCID = "0000-0002-5125-4188")),
person("Hiroaki", "Yutani", role = "aut",
comment = c(ORCID = "0000-0002-3385-7233")),
person("Dewey", "Dunnington", role = "aut",
comment = c(ORCID = "0000-0002-9415-4582")),
person("Posit, PBC", role = c("cph", "fnd"))
)
Description: |-
A system for 'declaratively' creating graphics, based on "The
Grammar of Graphics". You provide the data, tell 'ggplot2' how to map
variables to aesthetics, what graphical primitives to use, and it
takes care of the details.
License: MIT + file LICENSE
URL: |-
https://ggplot2.tidyverse.org,
https://github.com/tidyverse/ggplot2
BugReports: https://github.com/tidyverse/ggplot2/issues
Depends: R (>= 3.3)
Imports: |-
cli, glue, grDevices, grid, gtable (>= 0.1.1), isoband,
lifecycle (> 1.0.1), MASS, mgcv, rlang (>= 1.1.0), scales (>=
1.2.0), stats, tibble, vctrs (>= 0.5.0), withr (>= 2.5.0)
Suggests: |-
covr, dplyr, ggplot2movies, hexbin, Hmisc, knitr, lattice,
mapproj, maps, maptools, multcomp, munsell, nlme, profvis,
quantreg, ragg, RColorBrewer, rgeos, rmarkdown, rpart, sf (>=
0.7-3), svglite (>= 1.2.0.9001), testthat (>= 3.1.2), vdiffr
(>= 1.0.0), xml2
Enhances: sp
VignetteBuilder: knitr
Config/Needs/website: ggtext, tidyr, forcats, tidyverse/tidytemplate
Config/testthat/edition: '3'
Encoding: UTF-8
LazyData: 'true'
RoxygenNote: 7.2.3
Collate: |-
'ggproto.R' 'ggplot-global.R' 'aaa-.R'
'aes-colour-fill-alpha.R' 'aes-evaluation.R'
'aes-group-order.R' 'aes-linetype-size-shape.R'
'aes-position.R' 'compat-plyr.R' 'utilities.R' 'aes.R'
'utilities-checks.R' 'legend-draw.R' 'geom-.R'
'annotation-custom.R' 'annotation-logticks.R' 'geom-polygon.R'
'geom-map.R' 'annotation-map.R' 'geom-raster.R'
'annotation-raster.R' 'annotation.R' 'autolayer.R' 'autoplot.R'
'axis-secondary.R' 'backports.R' 'bench.R' 'bin.R' 'coord-.R'
'coord-cartesian-.R' 'coord-fixed.R' 'coord-flip.R'
'coord-map.R' 'coord-munch.R' 'coord-polar.R'
'coord-quickmap.R' 'coord-sf.R' 'coord-transform.R' 'data.R'
'facet-.R' 'facet-grid-.R' 'facet-null.R' 'facet-wrap.R'
'fortify-lm.R' 'fortify-map.R' 'fortify-multcomp.R'
'fortify-spatial.R' 'fortify.R' 'stat-.R' 'geom-abline.R'
'geom-rect.R' 'geom-bar.R' 'geom-bin2d.R' 'geom-blank.R'
'geom-boxplot.R' 'geom-col.R' 'geom-path.R' 'geom-contour.R'
'geom-count.R' 'geom-crossbar.R' 'geom-segment.R'
'geom-curve.R' 'geom-defaults.R' 'geom-ribbon.R'
'geom-density.R' 'geom-density2d.R' 'geom-dotplot.R'
'geom-errorbar.R' 'geom-errorbarh.R' 'geom-freqpoly.R'
'geom-function.R' 'geom-hex.R' 'geom-histogram.R'
'geom-hline.R' 'geom-jitter.R' 'geom-label.R'
'geom-linerange.R' 'geom-point.R' 'geom-pointrange.R'
'geom-quantile.R' 'geom-rug.R' 'geom-sf.R' 'geom-smooth.R'
'geom-spoke.R' 'geom-text.R' 'geom-tile.R' 'geom-violin.R'
'geom-vline.R' 'ggplot2-package.R' 'grob-absolute.R'
'grob-dotstack.R' 'grob-null.R' 'grouping.R' 'guide-bins.R'
'guide-colorbar.R' 'guide-colorsteps.R' 'guide-legend.R'
'guides-.R' 'guides-axis.R' 'guides-grid.R' 'guides-none.R'
'hexbin.R' 'import-standalone-obj-type.R'
'import-standalone-types-check.R' 'labeller.R' 'labels.R'
'layer.R' 'layer-sf.R' 'layout.R' 'limits.R' 'margins.R'
'performance.R' 'plot-build.R' 'plot-construction.R'
'plot-last.R' 'plot.R' 'position-.R' 'position-collide.R'
'position-dodge.R' 'position-dodge2.R' 'position-identity.R'
'position-jitter.R' 'position-jitterdodge.R' 'position-nudge.R'
'position-stack.R' 'quick-plot.R' 'reshape-add-margins.R'
'save.R' 'scale-.R' 'scale-alpha.R' 'scale-binned.R'
'scale-brewer.R' 'scale-colour.R' 'scale-continuous.R'
'scale-date.R' 'scale-discrete-.R' 'scale-expansion.R'
'scale-gradient.R' 'scale-grey.R' 'scale-hue.R'
'scale-identity.R' 'scale-linetype.R' 'scale-linewidth.R'
'scale-manual.R' 'scale-shape.R' 'scale-size.R' 'scale-steps.R'
'scale-type.R' 'scale-view.R' 'scale-viridis.R' 'scales-.R'
'stat-align.R' 'stat-bin.R' 'stat-bin2d.R' 'stat-bindot.R'
'stat-binhex.R' 'stat-boxplot.R' 'stat-contour.R'
'stat-count.R' 'stat-density-2d.R' 'stat-density.R'
'stat-ecdf.R' 'stat-ellipse.R' 'stat-function.R'
'stat-identity.R' 'stat-qq-line.R' 'stat-qq.R'
'stat-quantilemethods.R' 'stat-sf-coordinates.R' 'stat-sf.R'
'stat-smooth-methods.R' 'stat-smooth.R' 'stat-sum.R'
'stat-summary-2d.R' 'stat-summary-bin.R' 'stat-summary-hex.R'
'stat-summary.R' 'stat-unique.R' 'stat-ydensity.R'
'summarise-plot.R' 'summary.R' 'theme-elements.R' 'theme.R'
'theme-defaults.R' 'theme-current.R' 'utilities-break.R'
'utilities-grid.R' 'utilities-help.R' 'utilities-matrix.R'
'utilities-resolution.R' 'utilities-table.R'
'utilities-tidy-eval.R' 'zxx.R' 'zzz.R'
NeedsCompilation: 'no'
Packaged: 2023-08-07 18:07:11 UTC; teunv
Author: |-
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>),
Lionel Henry [aut],
Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
Kohske Takahashi [aut],
Claus Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),
Kara Woo [aut] (<https://orcid.org/0000-0002-5125-4188>),
Hiroaki Yutani [aut] (<https://orcid.org/0000-0002-3385-7233>),
Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>),
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <[email protected]>
Repository: RSPM
Date/Publication: 2023-08-14 11:20:02 UTC
Built: R 4.3.1; ; 2024-02-06 17:55:36 UTC; unix
RobinCar:
Package: RobinCar
Type: Package
Title: Robust Estimation and Inference in Covariate-Adaptive Randomization
Version: 0.1.0
Author: Ting Ye, Yanyao Yi, Marlena Bannick, Faith Bian
Maintainer: Marlena Bannick <[email protected]>
Description: Performs robust estimation and inference when using covariate adjustment
and/or covariate-adaptive randomization in randomized controlled trials.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: 'true'
RoxygenNote: 7.1.2
Imports: |-
dplyr,
magrittr,
tidyr,
emulator,
numDeriv,
tidyverse,
stats,
rlang,
survival,
fastDummies,
data.table,
broom,
SuperLearner,
AIPW,
MASS
Depends: R (>= 2.10)
Suggests: |-
knitr,
rmarkdown,
ranger,
forcats,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: '3'
Built: R 4.3.1; ; 2024-02-06 23:35:28 UTC; unix
beeca:
Package: beeca
Title: Binary Endpoint Estimation with Covariate Adjustment
Version: 0.1.2
Authors@R: "\n c(person(given = \"Alex\", \n family = \"Przybylski\",
\n email = \"[email protected]\", \n role
= c(\"cre\", \"aut\")\n ),\n person(given = \"Mark\", \n family
= \"Baillie\", \n email = \"[email protected]\", \n role
= c(\"aut\"), \n comment = c(ORCID = \"0000-0002-5618-0667\")\n ),\n
\ person(given = \"Craig\", \n family = \"Wang\", \n email
= \"[email protected]\", \n role = c(\"aut\"),\n comment
= c(ORCID = \"0000-0003-1804-2463\")\n ),\n person(given = \"Dominic\",
\n family = \"Magirr\", \n email = \"[email protected]\",
\n role = c(\"aut\")\n ))"
Description: "A lightweight package to perform estimation of marginal treatment
\n effects for binary outcomes when using logistic regression working models
with \n covariate adjustment (see discussions in Magirr et al (2024) <https://osf.io/9mp58/>).
Implements the variance estimators of \n Ge et al (2011) <doi:10.1177/009286151104500409>
and\n Ye et al (2023) <doi:10.1080/24754269.2023.2205802>. "
Maintainer: Alex Przybylski <[email protected]>
License: LGPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests: |-
knitr,
rmarkdown,
testthat (>= 3.0.0),
tidyr,
marginaleffects,
margins,
RobinCar (== 0.3.0)
Config/testthat/edition: '3'
Depends: R (>= 2.10)
LazyData: 'true'
Imports: |-
dplyr,
lifecycle,
sandwich,
stats
VignetteBuilder: knitr
URL: https://openpharma.github.io/beeca/
Author: |-
Alex Przybylski [cre, aut],
Mark Baillie [aut] (<https://orcid.org/0000-0002-5618-0667>),
Craig Wang [aut] (<https://orcid.org/0000-0003-1804-2463>),
Dominic Magirr [aut]
Built: R 4.3.1; ; 2024-06-14 12:53:20 UTC; unix
RemoteType: github
RemoteHost: api.github.com
RemoteUsername: openpharma
RemoteRepo: beeca
RemoteRef: main
RemoteSha: 6003475c6f18e363d1c16ab557d8160aaf7f6ae0
GithubHost: api.github.com
GithubRepo: beeca
GithubUsername: openpharma
GithubRef: main
GithubSHA1: 6003475c6f18e363d1c16ab557d8160aaf7f6ae0
clustermq:
Package: clustermq
Title: |-
Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Version: 0.8.95.5
Authors@R: |-
c(
person('Michael', 'Schubert', email='[email protected]',
role = c('aut', 'cre'),
comment = c(ORCID='0000-0002-6862-5221'))
)
Maintainer: Michael Schubert <[email protected]>
Description: |-
Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
URL: https://mschubert.github.io/clustermq/
BugReports: https://github.com/mschubert/clustermq/issues
Depends: R (>= 3.6.2)
LinkingTo: Rcpp
SystemRequirements: ZeroMQ (libzmq)
Imports: methods, narray, progress, purrr, R6, Rcpp, utils
License: Apache License (== 2.0) | file LICENSE
Encoding: UTF-8
Suggests: |-
callr, devtools, dplyr, foreach, iterators, knitr, parallel,
rmarkdown, roxygen2 (>= 5.0.0), testthat, tools
VignetteBuilder: knitr
RoxygenNote: 7.1.0
NeedsCompilation: 'yes'
Packaged: 2023-02-18 23:55:01 UTC; mschu
Author: Michael Schubert [aut, cre] (<https://orcid.org/0000-0002-6862-5221>)
Repository: RSPM
Date/Publication: 2023-02-19 08:00:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 19:24:50 UTC; unix
dplyr:
Type: Package
Package: dplyr
Title: A Grammar of Data Manipulation
Version: 1.1.3
Authors@R: |-
c(
person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-4757-117X")),
person("Romain", "François", role = "aut",
comment = c(ORCID = "0000-0002-2444-4226")),
person("Lionel", "Henry", role = "aut"),
person("Kirill", "Müller", role = "aut",
comment = c(ORCID = "0000-0002-1416-3412")),
person("Davis", "Vaughan", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0003-4777-038X")),
person("Posit Software, PBC", role = c("cph", "fnd"))
)
Description: |-
A fast, consistent tool for working with data frame like
objects, both in memory and out of memory.
License: MIT + file LICENSE
URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
BugReports: https://github.com/tidyverse/dplyr/issues
Depends: R (>= 3.5.0)
Imports: |-
cli (>= 3.4.0), generics, glue (>= 1.3.2), lifecycle (>=
1.0.3), magrittr (>= 1.5), methods, pillar (>= 1.9.0), R6,
rlang (>= 1.1.0), tibble (>= 3.2.0), tidyselect (>= 1.2.0),
utils, vctrs (>= 0.6.0)
Suggests: |-
bench, broom, callr, covr, DBI, dbplyr (>= 2.2.1), ggplot2,
knitr, Lahman, lobstr, microbenchmark, nycflights13, purrr,
rmarkdown, RMySQL, RPostgreSQL, RSQLite, stringi (>= 1.7.6),
testthat (>= 3.1.5), tidyr (>= 1.3.0), withr
VignetteBuilder: knitr
Config/Needs/website: tidyverse, shiny, pkgdown, tidyverse/tidytemplate
Config/testthat/edition: '3'
Encoding: UTF-8
LazyData: 'true'
RoxygenNote: 7.2.3
NeedsCompilation: 'yes'
Packaged: 2023-08-25 22:28:32 UTC; hadleywickham
Author: |-
Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Lionel Henry [aut],
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
Davis Vaughan [aut] (<https://orcid.org/0000-0003-4777-038X>),
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <[email protected]>
Repository: CRAN
Date/Publication: 2023-09-03 16:20:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:58:10 UTC; unix
loadedOnly:
utf8:
Package: utf8
Title: Unicode Text Processing
Version: 1.2.3
Authors@R: |2-
c(person(given = c("Patrick", "O."),
family = "Perry",
role = c("aut", "cph")),
person(given = "Kirill",
family = "M\u00fcller",
role = "cre",
email = "[email protected]"),
person(given = "Unicode, Inc.",
role = c("cph", "dtc"),
comment = "Unicode Character Database"))
Description: |-
Process and print 'UTF-8' encoded international
text (Unicode). Input, validate, normalize, encode, format, and
display.
License: Apache License (== 2.0) | file LICENSE
URL: https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8
BugReports: https://github.com/patperry/r-utf8/issues
Depends: R (>= 2.10)
Suggests: |-
cli, covr, knitr, rlang, rmarkdown, testthat (>= 3.0.0),
withr
VignetteBuilder: knitr, rmarkdown
Config/testthat/edition: '3'
Encoding: UTF-8
RoxygenNote: 7.2.3
NeedsCompilation: 'yes'
Packaged: 2023-01-31 05:28:43 UTC; kirill
Author: |-
Patrick O. Perry [aut, cph],
Kirill Müller [cre],
Unicode, Inc. [cph, dtc] (Unicode Character Database)
Maintainer: Kirill Müller <[email protected]>
Repository: RSPM
Date/Publication: 2023-01-31 18:00:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:54:47 UTC; unix
generics:
Package: generics
Title: |-
Common S3 Generics not Provided by Base R Methods Related to
Model Fitting
Version: 0.1.3
Authors@R: |-
c(
person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre")),
person("Max", "Kuhn", , "[email protected]", role = "aut"),
person("Davis", "Vaughan", , "[email protected]", role = "aut"),
person("RStudio", role = "cph")
)
Description: |-
In order to reduce potential package dependencies and
conflicts, generics provides a number of commonly used S3 generics.
License: MIT + file LICENSE
URL: https://generics.r-lib.org, https://github.com/r-lib/generics
BugReports: https://github.com/r-lib/generics/issues
Depends: R (>= 3.2)
Imports: methods
Suggests: covr, pkgload, testthat (>= 3.0.0), tibble, withr
Config/Needs/website: tidyverse/tidytemplate
Config/testthat/edition: '3'
Encoding: UTF-8
RoxygenNote: 7.2.0
NeedsCompilation: 'no'
Packaged: 2022-07-05 14:52:13 UTC; davis
Author: |-
Hadley Wickham [aut, cre],
Max Kuhn [aut],
Davis Vaughan [aut],
RStudio [cph]
Maintainer: Hadley Wickham <[email protected]>
Repository: RSPM
Date/Publication: 2022-07-05 19:40:02 UTC
Built: R 4.3.1; ; 2024-02-06 17:58:03 UTC; unix
tidyr:
Package: tidyr
Title: Tidy Messy Data
Version: 1.3.0
Authors@R: |-
c(
person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre")),
person("Davis", "Vaughan", , "[email protected]", role = "aut"),
person("Maximilian", "Girlich", role = "aut"),
person("Kevin", "Ushey", , "[email protected]", role = "ctb"),
person("Posit, PBC", role = c("cph", "fnd"))
)
Description: |-
Tools to help to create tidy data, where each column is a
variable, each row is an observation, and each cell contains a single
value. 'tidyr' contains tools for changing the shape (pivoting) and
hierarchy (nesting and 'unnesting') of a dataset, turning deeply
nested lists into rectangular data frames ('rectangling'), and
extracting values out of string columns. It also includes tools for
working with missing values (both implicit and explicit).
License: MIT + file LICENSE
URL: https://tidyr.tidyverse.org, https://github.com/tidyverse/tidyr
BugReports: https://github.com/tidyverse/tidyr/issues
Depends: R (>= 3.4.0)
Imports: |-
cli (>= 3.4.1), dplyr (>= 1.0.10), glue, lifecycle (>= 1.0.3),
magrittr, purrr (>= 1.0.1), rlang (>= 1.0.4), stringr (>=
1.5.0), tibble (>= 2.1.1), tidyselect (>= 1.2.0), utils, vctrs
(>= 0.5.2)
Suggests: |-
covr, data.table, knitr, readr, repurrrsive (>= 1.1.0),
rmarkdown, testthat (>= 3.0.0)
LinkingTo: cpp11 (>= 0.4.0)
VignetteBuilder: knitr
Config/Needs/website: tidyverse/tidytemplate
Config/testthat/edition: '3'
Encoding: UTF-8
LazyData: 'true'
RoxygenNote: 7.2.3
SystemRequirements: C++11
NeedsCompilation: 'yes'
Packaged: 2023-01-23 22:21:00 UTC; hadleywickham
Author: |-
Hadley Wickham [aut, cre],
Davis Vaughan [aut],
Maximilian Girlich [aut],
Kevin Ushey [ctb],
Posit, PBC [cph, fnd]
Maintainer: Hadley Wickham <[email protected]>
Repository: RSPM
Date/Publication: 2023-01-24 16:00:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 18:03:38 UTC; unix
lattice:
Package: lattice
Version: 0.21-8
Date: '2023-04-05'
Priority: recommended
Title: Trellis Graphics for R
Authors@R: "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"),\n\t
\ email = \"[email protected]\",\n\t\t comment = c(ORCID
= \"0000-0003-4107-1553\")),\n person(\"Felix\", \"Andrews\", role
= \"ctb\"),\n\t person(\"Kevin\", \"Wright\", role = \"ctb\", comment =
\"documentation\"),\n\t person(\"Neil\", \"Klepeis\", role = \"ctb\"),\n\t
\ person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous
improvements\"),\n person(\"Zhijian (Jason)\", \"Wen\", role =
\"cph\", comment = \"filled contour code\"),\n person(\"Paul\",
\"Murrell\", role = \"ctb\", email = \"[email protected]\"),\n\t person(\"Stefan\",
\"Eng\", role = \"ctb\", comment = \"violin plot improvements\"),\n\t person(\"Achim\",
\"Zeileis\", role = \"ctb\", comment = \"modern colors\")\n\t )"
Description: |-
A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Depends: R (>= 4.0.0)
Suggests: KernSmooth, MASS, latticeExtra, colorspace
Imports: grid, grDevices, graphics, stats, utils
Enhances: chron
LazyLoad: 'yes'
LazyData: 'yes'
License: GPL (>= 2)
URL: https://lattice.r-forge.r-project.org/
BugReports: https://github.com/deepayan/lattice/issues
NeedsCompilation: 'yes'
Packaged: 2023-04-05 15:31:40 UTC; deepayan
Author: |-
Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>),
Felix Andrews [ctb],
Kevin Wright [ctb] (documentation),
Neil Klepeis [ctb],
Johan Larsson [ctb] (miscellaneous improvements),
Zhijian (Jason) Wen [cph] (filled contour code),
Paul Murrell [ctb],
Stefan Eng [ctb] (violin plot improvements),
Achim Zeileis [ctb] (modern colors)
Maintainer: Deepayan Sarkar <[email protected]>
Repository: RSPM
Date/Publication: 2023-04-05 17:43:19 UTC
Encoding: UTF-8
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:45:51 UTC; unix
hms:
Package: hms
Title: Pretty Time of Day
Date: '2023-03-21'
Version: 1.1.3
Authors@R: |-
c(
person("Kirill", "Müller", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-1416-3412")),
person("R Consortium", role = "fnd"),
person("RStudio", role = "fnd")
)
Description: |-
Implements an S3 class for storing and formatting time-of-day
values, based on the 'difftime' class.
Imports: |-
lifecycle, methods, pkgconfig, rlang (>= 1.0.2), vctrs (>=
0.3.8)
Suggests: crayon, lubridate, pillar (>= 1.1.0), testthat (>= 3.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://hms.tidyverse.org/, https://github.com/tidyverse/hms
BugReports: https://github.com/tidyverse/hms/issues
RoxygenNote: 7.2.3
Config/testthat/edition: '3'
Config/autostyle/scope: line_breaks
Config/autostyle/strict: 'false'
Config/Needs/website: tidyverse/tidytemplate
NeedsCompilation: 'no'
Packaged: 2023-03-21 16:52:11 UTC; kirill
Author: |-
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
R Consortium [fnd],
RStudio [fnd]
Maintainer: Kirill Müller <[email protected]>
Repository: RSPM
Date/Publication: 2023-03-21 18:10:02 UTC
Built: R 4.3.1; ; 2024-02-06 18:11:21 UTC; unix
digest:
Package: digest
Author: |-
Dirk Eddelbuettel <[email protected]> with contributions
by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,
Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell,
Matthew de Queljoe, Ion Suruceanu, Bill Denney, Dirk Schumacher,
Winston Chang, and Dean Attali.
Version: 0.6.33
Date: '2023-06-28'
Maintainer: Dirk Eddelbuettel <[email protected]>
Title: Create Compact Hash Digests of R Objects
Description: |-
Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash', 'blake3' and 'crc32c' algorithms) permitting
easy comparison of R language objects, as well as functions such as'hmac()' to
create hash-based message authentication code. Please note that this package
is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be
used.
URL: |-
https://github.com/eddelbuettel/digest,
https://dirk.eddelbuettel.com/code/digest.html
BugReports: https://github.com/eddelbuettel/digest/issues
Depends: R (>= 3.3.0)
Imports: utils
License: GPL (>= 2)
Suggests: tinytest, simplermarkdown
VignetteBuilder: simplermarkdown
NeedsCompilation: 'yes'
Packaged: 2023-06-28 02:46:18 UTC; edd
Repository: RSPM
Date/Publication: 2023-07-07 14:10:02 UTC
Encoding: UTF-8
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 18:00:16 UTC; unix
magrittr:
Type: Package
Package: magrittr
Title: A Forward-Pipe Operator for R
Version: 2.0.3
Authors@R: |-
c(
person("Stefan Milton", "Bache", , "[email protected]", role = c("aut", "cph"),
comment = "Original author and creator of magrittr"),
person("Hadley", "Wickham", , "[email protected]", role = "aut"),
person("Lionel", "Henry", , "[email protected]", role = "cre"),
person("RStudio", role = c("cph", "fnd"))
)
Description: |-
Provides a mechanism for chaining commands with a new
forward-pipe operator, %>%. This operator will forward a value, or the
result of an expression, into the next function call/expression.
There is flexible support for the type of right-hand side expressions.
For more information, see package vignette. To quote Rene Magritte,
"Ceci n'est pas un pipe."
License: MIT + file LICENSE
URL: |-
https://magrittr.tidyverse.org,
https://github.com/tidyverse/magrittr
BugReports: https://github.com/tidyverse/magrittr/issues
Depends: R (>= 3.4.0)
Suggests: covr, knitr, rlang, rmarkdown, testthat
VignetteBuilder: knitr
ByteCompile: 'Yes'
Config/Needs/website: tidyverse/tidytemplate
Encoding: UTF-8
RoxygenNote: 7.1.2
NeedsCompilation: 'yes'
Packaged: 2022-03-29 09:34:37 UTC; lionel
Author: |-
Stefan Milton Bache [aut, cph] (Original author and creator of
magrittr),
Hadley Wickham [aut],
Lionel Henry [cre],
RStudio [cph, fnd]
Maintainer: Lionel Henry <[email protected]>
Repository: RSPM
Date/Publication: 2022-03-30 07:30:09 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:54:44 UTC; unix
evaluate:
Package: evaluate
Type: Package
Title: |-
Parsing and Evaluation Tools that Provide More Details than the
Default
Version: '0.21'
Authors@R: |-
c(
person("Hadley", "Wickham", role = "aut"),
person("Yihui", "Xie", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0003-0645-5666")),
person("Michael", "Lawrence", role = "ctb"),
person("Thomas", "Kluyver", role = "ctb"),
person("Jeroen", "Ooms", role = "ctb"),
person("Barret", "Schloerke", role = "ctb"),
person("Adam", "Ryczkowski", role = "ctb"),
person("Hiroaki", "Yutani", role = "ctb"),
person("Michel", "Lang", role = "ctb"),
person("Karolis", "Koncevičius", role = "ctb"),
person(given = "Posit Software, PBC", role = c("cph", "fnd"))
)
Description: |-
Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
License: MIT + file LICENSE
URL: https://github.com/r-lib/evaluate
BugReports: https://github.com/r-lib/evaluate/issues
Depends: R (>= 3.0.2)
Imports: methods
Suggests: covr, ggplot2, lattice, rlang, testthat (>= 3.0.0), withr
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/testthat/edition: '3'
NeedsCompilation: 'no'
Packaged: 2023-05-01 21:56:45 UTC; yihui
Author: |-
Hadley Wickham [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevičius [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <[email protected]>
Repository: RSPM
Date/Publication: 2023-05-05 23:30:02 UTC
Built: R 4.3.1; ; 2024-02-06 18:05:33 UTC; unix
grid:
Package: grid
Version: 4.3.1
Priority: base
Title: The Grid Graphics Package
Author: Paul Murrell <[email protected]>
Maintainer: R Core Team <[email protected]>
Contact: R-help mailing list <[email protected]>
Description: |-
A rewrite of the graphics layout capabilities, plus some
support for interaction.
Imports: grDevices, utils
License: Part of R 4.3.1
NeedsCompilation: 'yes'
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:44:22 UTC; unix
iterators:
Package: iterators
Type: Package
Title: Provides Iterator Construct
Version: 1.0.14
Authors@R: |-
c(person("Folashade", "Daniel", role="cre", email="[email protected]"),
person("Revolution", "Analytics", role=c("aut", "cph")),
person("Steve", "Weston", role="aut"))
Description: |-
Support for iterators, which allow a programmer to traverse
through all the elements of a vector, list, or other collection of data.
URL: https://github.com/RevolutionAnalytics/iterators
Depends: R (>= 2.5.0), utils
Suggests: RUnit, foreach
License: Apache License (== 2.0)
NeedsCompilation: 'no'
Packaged: 2022-01-16 18:19:31 UTC; folashade
Author: |-
Folashade Daniel [cre],
Revolution Analytics [aut, cph],
Steve Weston [aut]
Maintainer: Folashade Daniel <[email protected]>
Repository: RSPM
Date/Publication: 2022-02-05 00:50:08 UTC
Encoding: UTF-8
Built: R 4.3.1; ; 2024-02-06 17:56:09 UTC; unix
mvtnorm:
Package: mvtnorm
Title: Multivariate Normal and t Distributions
Version: 1.2-3
Date: '2023-08-17'
Authors@R: |-
c(person("Alan", "Genz", role = "aut"),
person("Frank", "Bretz", role = "aut"),
person("Tetsuhisa", "Miwa", role = "aut"),
person("Xuefei", "Mi", role = "aut"),
person("Friedrich", "Leisch", role = "ctb"),
person("Fabian", "Scheipl", role = "ctb"),
person("Bjoern", "Bornkamp", role = "ctb", comment = c(ORCID = "0000-0002-6294-8185")),
person("Martin", "Maechler", role = "ctb", comment = c(ORCID = "0000-0002-8685-9910")),
person("Torsten", "Hothorn", role = c("aut", "cre"),
email = "[email protected]", comment = c(ORCID = "0000-0001-8301-0471")))
Description: "Computes multivariate normal and t probabilities, quantiles, random
deviates, \n and densities. Log-likelihoods for multivariate Gaussian models
and Gaussian copulae \n parameterised by Cholesky factors of covariance or
precision matrices are implemented \n for interval-censored and exact data,
or a mix thereof. Score functions for these \n log-likelihoods are available.
A class representing multiple lower triangular matrices \n and corresponding
methods are part of this package."
Imports: stats
Depends: R(>= 3.5.0)
Suggests: qrng, numDeriv
License: GPL-2
URL: http://mvtnorm.R-forge.R-project.org
NeedsCompilation: 'yes'
Packaged: 2023-08-17 08:50:49 UTC; hothorn
Author: |-
Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>),
Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>),
Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <[email protected]>
Repository: RSPM
Date/Publication: 2023-08-25 14:00:02 UTC
Encoding: UTF-8
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 18:18:41 UTC; unix
fastmap:
Package: fastmap
Title: Fast Data Structures
Version: 1.1.1
Authors@R: |-
c(
person("Winston", "Chang", email = "[email protected]", role = c("aut", "cre")),
person(given = "RStudio", role = c("cph", "fnd")),
person(given = "Tessil", role = "cph", comment = "hopscotch_map library")
)
Description: |-
Fast implementation of data structures, including a key-value
store, stack, and queue. Environments are commonly used as key-value stores
in R, but every time a new key is used, it is added to R's global symbol
table, causing a small amount of memory leakage. This can be problematic in
cases where many different keys are used. Fastmap avoids this memory leak
issue by implementing the map using data structures in C++.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
Suggests: testthat (>= 2.1.1)
URL: https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap
BugReports: https://github.com/r-lib/fastmap/issues
NeedsCompilation: 'yes'
Packaged: 2023-02-24 16:01:27 UTC; winston
Author: |-
Winston Chang [aut, cre],
RStudio [cph, fnd],
Tessil [cph] (hopscotch_map library)
Maintainer: Winston Chang <[email protected]>
Repository: RSPM
Date/Publication: 2023-02-24 16:30:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 18:05:08 UTC; unix
foreach:
Package: foreach
Type: Package
Title: Provides Foreach Looping Construct
Version: 1.5.2
Authors@R: |-
c(person("Folashade", "Daniel", role="cre", email="[email protected]"),
person("Hong", "Ooi", role="ctb"),
person("Rich", "Calaway", role="ctb"),
person("Microsoft", role=c("aut", "cph")),
person("Steve", "Weston", role="aut"))
Description: |-
Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation
of a function. Using foreach without side effects also
facilitates executing the loop in parallel.
License: Apache License (== 2.0)
URL: https://github.com/RevolutionAnalytics/foreach
BugReports: https://github.com/RevolutionAnalytics/foreach/issues
Depends: R (>= 2.5.0)
Imports: codetools, utils, iterators
Suggests: randomForest, doMC, doParallel, testthat, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Collate: |-
'callCombine.R' 'foreach.R' 'do.R' 'foreach-ext.R'
'foreach-pkg.R' 'getDoPar.R' 'getDoSeq.R' 'getsyms.R' 'iter.R'
'nextElem.R' 'onLoad.R' 'setDoPar.R' 'setDoSeq.R' 'times.R'
'utils.R'
NeedsCompilation: 'no'
Packaged: 2022-01-11 04:21:12 UTC; fdaniel
Author: |-
Folashade Daniel [cre],
Hong Ooi [ctb],
Rich Calaway [ctb],
Microsoft [aut, cph],
Steve Weston [aut]
Maintainer: Folashade Daniel <[email protected]>
Repository: RSPM
Date/Publication: 2022-02-02 09:20:02 UTC
Encoding: UTF-8
Built: R 4.3.1; ; 2024-02-06 17:56:11 UTC; unix
rprojroot:
Package: rprojroot
Title: Finding Files in Project Subdirectories
Version: 2.0.3
Authors@R: |2-
person(given = "Kirill",
family = "M\u00fcller",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-1416-3412"))
Description: |-
Robust, reliable and flexible paths to files below
a project root. The 'root' of a project is defined as a directory that
matches a certain criterion, e.g., it contains a certain regular file.
License: MIT + file LICENSE
URL: https://rprojroot.r-lib.org/, https://github.com/r-lib/rprojroot
BugReports: https://github.com/r-lib/rprojroot/issues
Depends: R (>= 3.0.0)
Suggests: |-
covr, knitr, lifecycle, mockr, rmarkdown, testthat (>=
3.0.0), withr
VignetteBuilder: knitr
Config/testthat/edition: '3'
Encoding: UTF-8
RoxygenNote: 7.1.2
NeedsCompilation: 'no'
Packaged: 2022-04-02 16:14:00 UTC; kirill
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>)
Maintainer: Kirill Müller <[email protected]>
Repository: RSPM
Date/Publication: 2022-04-02 16:40:02 UTC
Built: R 4.3.1; ; 2024-02-06 18:17:17 UTC; unix
Matrix:
Package: Matrix
Version: 1.6-1
Date: '2023-08-11'
Priority: recommended
Title: Sparse and Dense Matrix Classes and Methods
Description: "A rich hierarchy of sparse and dense matrix classes,\n\tincluding
general, symmetric, triangular, and diagonal matrices\n\twith numeric, logical,
or pattern entries. Efficient methods for\n\toperating on such matrices, often
wrapping the 'BLAS', 'LAPACK',\n\tand 'SuiteSparse' libraries."
License: GPL (>= 2) | file LICENCE
URL: https://Matrix.R-forge.R-project.org
BugReports: https://R-forge.R-project.org/tracker/?atid=294&group_id=61
Contact: [email protected]
Authors@R: "\n\tc(person(\"Douglas\", \"Bates\", role = \"aut\",\n\t comment
= c(ORCID = \"0000-0001-8316-9503\")),\n\t person(\"Martin\", \"Maechler\",
role = c(\"aut\", \"cre\"),\n\t email = \"[email protected]\",\n\t
\ comment = c(ORCID = \"0000-0002-8685-9910\")),\n\t person(\"Mikael\",
\"Jagan\", role = \"aut\",\n\t comment = c(ORCID = \"0000-0002-3542-2938\")),\n\t
\ person(\"Timothy A.\", \"Davis\", role = \"ctb\",\n\t comment = c(ORCID
= \"0000-0001-7614-6899\",\n\t \"SuiteSparse libraries,
notably CHOLMOD and AMD\",\n\t \"collaborators listed in
dir(pattern=\\\"^[A-Z]+[.]txt$\\\", full.names=TRUE, system.file(\\\"doc\\\",
\\\"SuiteSparse\\\", package=\\\"Matrix\\\"))\")),\n\t person(\"Jens\", \"Oehlschlägel\",
role = \"ctb\",\n\t comment = \"initial nearPD()\"),\n\t person(\"Jason\",
\"Riedy\", role = \"ctb\",\n\t comment = c(ORCID = \"0000-0002-4345-4200\",\n\t
\ \"GNU Octave's condest() and onenormest()\",\n\t \"Copyright:
Regents of the University of California\")),\n\t person(\"R Core Team\", role
= \"ctb\",\n\t comment = \"base R's matrix implementation\"))"
Depends: R (>= 3.5.0), methods
Imports: grDevices, graphics, grid, lattice, stats, utils
Suggests: MASS, datasets, sfsmisc
Enhances: SparseM, graph
LazyData: 'no'
LazyDataNote: not possible, since we use data/*.R and our S4 classes
BuildResaveData: 'no'
Encoding: UTF-8
NeedsCompilation: 'yes'
Packaged: 2023-08-11 10:11:59 UTC; maechler
Author: |-
Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>),
Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>),
Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>,
SuiteSparse libraries, notably CHOLMOD and AMD, collaborators
listed in dir(pattern="^[A-Z]+[.]txt$", full.names=TRUE,
system.file("doc", "SuiteSparse", package="Matrix"))),
Jens Oehlschlägel [ctb] (initial nearPD()),
Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU
Octave's condest() and onenormest(), Copyright: Regents of the
University of California),
R Core Team [ctb] (base R's matrix implementation)
Maintainer: Martin Maechler <[email protected]>
Repository: RSPM
Date/Publication: 2023-08-14 07:20:02 UTC
Built: R 4.3.1; x86_64-pc-linux-gnu; 2024-02-06 17:46:39 UTC; unix
progress:
Package: progress
Title: Terminal Progress Bars
Version: 1.2.2
Author: Gábor Csárdi [aut, cre], Rich FitzJohn [aut]
Maintainer: Gábor Csárdi <[email protected]>
Description: |-
Configurable Progress bars, they may include percentage,
elapsed time, and/or the estimated completion time. They work in
terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the
'macOS' 'R.app'. The package also provides a 'C++' 'API', that works
with or without 'Rcpp'.
License: MIT + file LICENSE
LazyData: 'true'
URL: https://github.com/r-lib/progress#readme
BugReports: https://github.com/r-lib/progress/issues
Imports: hms, prettyunits, R6, crayon
Suggests: Rcpp, testthat, withr
RoxygenNote: 6.1.0
Encoding: UTF-8
NeedsCompilation: 'no'
Packaged: 2019-05-15 20:28:47 UTC; gaborcsardi
Repository: RSPM
Date/Publication: 2019-05-16 21:30:03 UTC
Built: R 4.3.1; ; 2024-02-06 18:41:43 UTC; unix
tidyverse:
Package: tidyverse
Title: Easily Install and Load the 'Tidyverse'
Version: 2.0.0
Authors@R: |-
c(
person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre")),
person("RStudio", role = c("cph", "fnd"))
)
Description: |-
The 'tidyverse' is a set of packages that work in harmony
because they share common data representations and 'API' design. This
package is designed to make it easy to install and load multiple
'tidyverse' packages in a single step. Learn more about the
'tidyverse' at <https://www.tidyverse.org>.
License: MIT + file LICENSE
URL: |-
https://tidyverse.tidyverse.org,
https://github.com/tidyverse/tidyverse