_pkgdown.yml

navbar:
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - news
    right: github
  components:
    home:
      icon: fas fa-home fa-lg
      href: index.html
    intro:
      text: Get Started
      href: articles/intro.html
    reference:
      text: Reference
      href: reference/index.html

template:
  bootstrap: 5
  params:
    ganalytics: UA-123997499-2

url: https://openpharma.github.io/simaerep/

articles:
- title: Articles
  navbar: ~
  contents:
  - intro
  - inframe
  - over
  - performance
  - funnel_perf
  - sas_files
  - portfolio_perf
  - visit_med75
  - usability_limits
  - check_poisson
  - visits_or_days

reference:
- title: S3 Interface
  desc: ~
  contents:
  - simaerep
  - plot.simaerep
- title: Main Functions
  desc: ~
  contents:
  - site_aggr
  - sim_sites
  - sim_inframe
  - eval_sites
  - prune_to_visit_med75_inframe
  - plot_study
  - check_df_visit
- title: Simulate Data
  desc: ~
  contents:
  - sim_test_data_study
  - get_config
  - sim_test_data_portfolio
- title: Test Functions
  desc: These functions are intented to check simaerep performance.
  contents:
  - sim_studies
  - sim_ur_scenarios
  - sim_ur
  - get_portf_perf
- title: Helper Functions
  desc: These functions are intended to be called by other functions.
  contents:
  - get_pat_pool_config
  - pat_pool
  - poiss_test_site_ae_vs_study_ae
  - prob_lower_site_ae_vs_study_ae
  - sim_test_data_patient
  - get_visit_med75
  - pat_aggr
  - get_site_mean_ae_dev
  - aggr_duplicated_visits
  - exp_implicit_missing_visits
  - prep_for_sim
  - sim_after_prep
  - get_ecd_values
  - purrr_bar
  - with_progress_cnd
  - sim_scenario
  - orivisit
  - is_simaerep
  - is_orivisit
  - max_rank
- title: Additional Plot Functions
  desc: These functions are intended for creating plots for the documentation.
  contents:
  - plot_visit_med75
  - plot_sim_examples
  - plot_sim_example
  - plot_dots