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Expaded repeat syntax checker #10

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Peter-J-Freeman opened this issue May 8, 2024 · 0 comments
Open

Expaded repeat syntax checker #10

Peter-J-Freeman opened this issue May 8, 2024 · 0 comments

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@Peter-J-Freeman
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Finally the HGVS committee have agreed on the allele syntax.

We can now revisit this code curently hashes out

                    # Format expanded repeat syntax
                    """
                    Waiting for HGVS nomenclature changes
                    """
                    # try:
                    #     toskip = expanded_repeats.convert_tandem(my_variant.quibble, my_variant.primary_assembly, "all")
                    # except Exception as e:
                    #     print(e)
                    # if toskip:
                    #     continue

A request came in from George Riley during a conversation. Can we also provide a function that maps from the old style expanded repeat syntax to the new style?

@Peter-J-Freeman Peter-J-Freeman changed the title Expaded repeat sintax checker Expaded repeat syntax checker May 8, 2024
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