diff --git a/deker/ABC/base_adapters.py b/deker/ABC/base_adapters.py index 96a814b..c6146db 100644 --- a/deker/ABC/base_adapters.py +++ b/deker/ABC/base_adapters.py @@ -230,7 +230,7 @@ def create_collection_from_meta( schema_class = SchemaTypeEnum[collection_data.get("type")].value try: - dtype = DTypeEnum[data["dtype"].lstrip("numpy.")].value + dtype = DTypeEnum[data["dtype"].split("numpy.")[-1]].value fill_value = ( dtype(data["fill_value"]) if data["fill_value"] is not None else data["fill_value"] ) diff --git a/deker/ABC/base_schemas.py b/deker/ABC/base_schemas.py index b181f70..1ee0009 100644 --- a/deker/ABC/base_schemas.py +++ b/deker/ABC/base_schemas.py @@ -27,7 +27,7 @@ from deker.errors import DekerInvalidSchemaError, DekerValidationError from deker.tools.schema import get_default_fill_value from deker.types.private.enums import DTypeEnum -from deker.types.private.typings import Numeric +from deker.types.private.typings import Numeric, NumericDtypes @dataclass(repr=True) @@ -90,7 +90,7 @@ class BaseArraysSchema: dtype: Type[Numeric] fill_value: Union[Numeric, type(np.nan), None] # type: ignore[valid-type] dimensions: Union[List[BaseDimensionSchema], Tuple[BaseDimensionSchema, ...]] - attributes: Union[List[BaseAttributeSchema], Tuple[BaseAttributeSchema, ...]] + attributes: Union[List[BaseAttributeSchema], Tuple[BaseAttributeSchema, ...], None] @property def primary_attributes(self) -> Optional[Tuple[BaseAttributeSchema, ...]]: @@ -121,6 +121,9 @@ def __attrs_post_init__(self) -> None: if len({d.name for d in self.dimensions}) < len(self.dimensions): raise DekerValidationError("Dimensions shall have unique names") + if self.dtype not in NumericDtypes: + raise DekerValidationError(f"Invalid dtype {self.dtype}") + try: if self.dtype == int: self.dtype = np.int64 @@ -163,6 +166,10 @@ def named_shape(self) -> Tuple[Tuple[str, int], ...]: @property def as_dict(self) -> dict: """Serialize as dict.""" + error = f'Schema "{self.__class__.__name__}" is invalid/corrupted: ' + + if self.dtype not in NumericDtypes: + raise DekerInvalidSchemaError(error + f"wrong dtype {self.dtype}") try: dtype = DTypeEnum.get_name(DTypeEnum(self.dtype)) fill_value = None if np.isnan(self.fill_value) else str(self.fill_value) # type: ignore[arg-type] @@ -174,6 +181,4 @@ def as_dict(self) -> dict: "fill_value": fill_value, } except (KeyError, ValueError) as e: - raise DekerInvalidSchemaError( - f'Schema "{self.__class__.__name__}" is invalid/corrupted: {e}' - ) + raise DekerInvalidSchemaError(error + str(e)) diff --git a/deker/client.py b/deker/client.py index 75ac531..06c6897 100644 --- a/deker/client.py +++ b/deker/client.py @@ -214,16 +214,20 @@ def __init__( try: set_logging_level(loglevel.upper()) self.__get_plugins() - mem_limit = convert_human_memory_to_bytes(memory_limit) + total_available_mem = virtual_memory().total + swap_memory().total + memory_limit = convert_human_memory_to_bytes(memory_limit) + if memory_limit >= total_available_mem or memory_limit <= 0: + mem_limit = total_available_mem + else: + mem_limit = memory_limit + self.__config = DekerConfig( # type: ignore[call-arg] uri=uri, workers=workers if workers is not None else cpu_count() + 4, write_lock_timeout=write_lock_timeout, write_lock_check_interval=write_lock_check_interval, loglevel=loglevel.upper(), - memory_limit=( - virtual_memory().total + swap_memory().total if mem_limit <= 0 else mem_limit - ), + memory_limit=mem_limit, ) self.__uri: Uri = Uri.create(self.__config.uri) self.__is_closed: bool = True diff --git a/deker/locks.py b/deker/locks.py index 212f666..448e881 100644 --- a/deker/locks.py +++ b/deker/locks.py @@ -181,7 +181,13 @@ def check_existing_lock(self, func_args: Sequence, func_kwargs: Dict) -> None: class WriteVarrayLock(BaseLock): - """Write lock for VArrays.""" + """Write lock for VArrays. + + VArray shall not be locked itself when writing data. + Only inner Arrays shall be locked. + If updating subsets do not intersect - it's OK, otherwise the first, + which managed to obtain all Array locks, will survive. + """ ALLOWED_TYPES = ["VSubset"] @@ -310,18 +316,27 @@ def release(self, e: Optional[Exception] = None) -> None: # noqa[ARG002] Path(f"{lock}:{os.getpid()}{LocksExtensions.varray_lock.value}").unlink(missing_ok=True) super().release() + def acquire(self, path: Optional[Path]) -> None: + """VArray shall not lock itself. + + :param path: path to the file to be locked + """ + pass + @staticmethod def _inner_method_logic( lock: "WriteVarrayLock", args: Sequence, kwargs: Dict, func: Callable ) -> Any: """Logic of acquiring lock and getting result. + When writing in VArray + :param lock: The lock that will be acquired :param func: decorated function :param args: arguments of decorated function :param kwargs: keyword arguments of decorated function """ - # If we want to skip logic of lock (e.g when we use server adapters) + # If we want to skip logic of lock (e.g. when we use server adapters) if lock.skip_lock: return lock.get_result(func, args, kwargs) return super()._inner_method_logic(lock, args, kwargs, func) diff --git a/deker/schemas.py b/deker/schemas.py index 53972ec..c83369b 100644 --- a/deker/schemas.py +++ b/deker/schemas.py @@ -265,6 +265,9 @@ def __common_arrays_attributes_post_init__(self: BaseArraysSchema) -> None: # n :param self: ArraySchema or VArraySchema instance """ + if self.attributes is None: + self.attributes = tuple() + if not isinstance(self.attributes, (tuple, list)): raise DekerValidationError("Attributes shall be a list or tuple of AttributeSchema") if any(not isinstance(a, AttributeSchema) for a in self.attributes): @@ -333,7 +336,7 @@ class VArraySchema(SelfLoggerMixin, BaseArraysSchema): vgrid: Optional[Union[List[int], Tuple[int, ...]]] = None arrays_shape: Optional[Union[List[int], Tuple[int, ...]]] = None fill_value: Union[Numeric, type(np.nan), None] = None # type: ignore[valid-type] - attributes: Union[List[AttributeSchema], Tuple[AttributeSchema, ...]] = tuple() + attributes: Union[List[AttributeSchema], Tuple[AttributeSchema, ...], None] = None def __attrs_post_init__(self) -> None: """Validate schema, convert `vgrid` or `arrays_shape` to tuple and calculate the other grid splitter.""" @@ -423,7 +426,7 @@ class ArraySchema(SelfLoggerMixin, BaseArraysSchema): """ fill_value: Union[Numeric, type(np.nan), None] = None # type: ignore[valid-type] - attributes: Union[List[AttributeSchema], Tuple[AttributeSchema, ...]] = tuple() + attributes: Union[List[AttributeSchema], Tuple[AttributeSchema, ...], None] = None def __attrs_post_init__(self) -> None: """Validate schema.""" diff --git a/deker/tools/array.py b/deker/tools/array.py index 5f1f66d..59f33c4 100644 --- a/deker/tools/array.py +++ b/deker/tools/array.py @@ -43,10 +43,10 @@ def convert_human_memory_to_bytes(memory_limit: Union[int, str]) -> int: :param memory_limit: memory limit provided by the user """ bytes_ = 1024 - mapping: Dict[str, int] = {"k": bytes_, "m": bytes_**2, "g": bytes_**3} + mapping: Dict[str, int] = {"k": bytes_, "m": bytes_**2, "g": bytes_**3, "t": bytes_**4} error = ( f"invalid memory_limit value: {memory_limit}; expected `int` or `str` in format [number][unit] " - f'where unit is one of ["k", "K", "m", "M", "g", "G"], e.g. "8G" or "512m"' + f'where unit is one of ["k", "K", "m", "M", "g", "G", "t", "T"], e.g. "8G" or "512m"' ) if not isinstance(memory_limit, (int, str)): raise DekerValidationError(error) @@ -81,15 +81,32 @@ def check_memory(shape: tuple, dtype: type, mem_limit_from_settings: int) -> Non array_size_bytes = np.dtype(dtype).itemsize * array_values array_size_human = convert_size_to_human(array_size_bytes) + total_machine_mem = virtual_memory().total + swap_memory().total + total_human_mem = convert_size_to_human(total_machine_mem) current_limit = virtual_memory().available + swap_memory().free limit = min(mem_limit_from_settings, current_limit) limit_human = convert_size_to_human(limit) + config_human_limit = convert_size_to_human(mem_limit_from_settings) + + deker_limit = f"{config_human_limit} ({mem_limit_from_settings} bytes). " + limit_message = ( + "Deker Client memory usage is limited to the total memory available on this machine: " + + deker_limit + ) + advise = "" + if total_machine_mem > mem_limit_from_settings: + limit_message = ( + f"Total memory available on this machine is {total_human_mem} ({total_machine_mem} bytes). " + f"Deker Client memory usage is manually limited to " + deker_limit + ) + advise = " Also, you may try to increase the value of Deker Client memory limit." if array_size_bytes > limit: raise DekerMemoryError( f"Can not allocate {array_size_human} for array/subset with shape {shape} and dtype {dtype}. " - f"Current Deker limit per array/subset is {limit_human}. Value in config: {mem_limit_from_settings}" - f"Reduce shape or dtype of your array/subset or increase Deker RAM limit." + f"{limit_message}" + f"Current available free memory per array/subset is {limit_human} ({limit} bytes). " + f"Reduce your schema or the `shape` of your subset or revise other processes memory usage.{advise}" ) diff --git a/deker/tools/schema.py b/deker/tools/schema.py index be9ed9c..358dbcc 100644 --- a/deker/tools/schema.py +++ b/deker/tools/schema.py @@ -93,7 +93,7 @@ def create_attributes_schema(attributes_schemas: List[dict]) -> Tuple["Attribute attributes = [] try: for params in attributes_schemas: - dtype = DTypeEnum[params["dtype"].lstrip("numpy.")].value + dtype = DTypeEnum[params["dtype"].split("numpy.")[-1]].value attr_schema = AttributeSchema(**{**params, "dtype": dtype}) attributes.append(attr_schema) return tuple(attributes) diff --git a/deker/types/private/enums.py b/deker/types/private/enums.py index ed5eb4c..54b1857 100644 --- a/deker/types/private/enums.py +++ b/deker/types/private/enums.py @@ -33,7 +33,18 @@ class DTypeEnum(Enum): int16 = np.int16 int32 = np.int32 int64 = np.int64 + int_ = np.int64 longlong = np.longlong + uint = np.uint + uint8 = np.uint8 + ubyte = np.ubyte + uint16 = np.uint16 + uint32 = np.uint32 + uintc = np.uintc + uint64 = np.uint64 + uintp = np.uintp + ushort = np.ushort + ulonglong = np.ulonglong float16 = np.float16 float32 = np.float32 float64 = np.float64 diff --git a/deker/types/private/typings.py b/deker/types/private/typings.py index 4bddbce..0ab14a0 100644 --- a/deker/types/private/typings.py +++ b/deker/types/private/typings.py @@ -54,7 +54,18 @@ np.int16, np.int32, np.int64, + np.uint, + np.uint8, + np.ubyte, + np.uint16, + np.uint32, + np.uintc, + np.uint64, + np.uintp, + np.ushort, + np.ulonglong, np.float16, + np.float32, np.float64, np.float128, np.longfloat, @@ -76,7 +87,18 @@ np.int16, np.int32, np.int64, + np.uint, + np.uint8, + np.ubyte, + np.uint16, + np.uint32, + np.uintc, + np.uint64, + np.uintp, + np.ushort, + np.ulonglong, np.float16, + np.float32, np.float64, np.float128, np.longfloat, diff --git a/deker/uri.py b/deker/uri.py index f9015a1..bef6640 100644 --- a/deker/uri.py +++ b/deker/uri.py @@ -18,7 +18,7 @@ from collections import OrderedDict, namedtuple from pathlib import Path -from typing import Dict, List, Optional, Tuple, Union +from typing import List, Optional, Tuple, Union from urllib.parse import ParseResult, _NetlocResultMixinStr, parse_qs, quote, urlparse from deker_tools.path import is_path_valid @@ -39,22 +39,22 @@ class Uri(ParseResultWithServers, _NetlocResultMixinStr): __annotations__ = OrderedDict( scheme={"separator": None, "divider": None}, netloc={"separator": "://", "divider": None}, - path={"separator": "/", "divider": None}, - params={"separator": ";", "divider": None}, + servers={"separator": "@", "divider": ","}, + path={"separator": "/", "divider": "/"}, + params={"separator": ";", "divider": ","}, query={"separator": "?", "divider": "&"}, fragment={"separator": "#", "divider": None}, - servers=Optional[List[str]], ) - query: Dict[str, List[str]] - servers: List[str] @property def raw_url(self) -> str: """Get url from raw uri without query string, arguments and fragments.""" - url = self.scheme + "://" # type: ignore[attr-defined] + url = self.scheme + self.__annotations__["netloc"]["separator"] # type: ignore[attr-defined] if self.netloc: # type: ignore[attr-defined] url += self.netloc # type: ignore[attr-defined] - url += quote(str(self.path), safe=":/") # type: ignore[attr-defined] + url += quote( + str(self.path), safe=self.__annotations__["netloc"]["separator"][:-1] # type: ignore[attr-defined] + ) return url @classmethod @@ -64,18 +64,33 @@ def __get_servers_and_netloc(cls, netloc: str, scheme: str) -> Tuple[str, Option :param netloc: Netloc object :param scheme: http or https """ - # If scheme is not http or https, it couldn't work in cluster mode - if "," not in netloc or scheme not in ["http", "https"]: + # If scheme is not http or https, it cannot work in cluster mode + if ( + scheme not in ["http", "https"] + or cls.__annotations__["servers"]["divider"] not in netloc + ): # So servers will be None return netloc, None # Otherwise parse servers - servers = netloc.split(",") + servers = netloc.split(cls.__annotations__["servers"]["divider"]) node_with_possible_auth = servers[0] - if "@" in node_with_possible_auth: - auth, _ = node_with_possible_auth.split("@") - return node_with_possible_auth, [f"{scheme}://{auth}@{host}" for host in servers[1:]] - return node_with_possible_auth, [f"{scheme}://{host}" for host in servers[1:]] + if cls.__annotations__["servers"]["separator"] in node_with_possible_auth: + auth, _ = node_with_possible_auth.split(cls.__annotations__["servers"]["separator"]) + return ( + node_with_possible_auth, + [ + f"{scheme}{cls.__annotations__['netloc']['separator']}" + f"{auth}" + f"{cls.__annotations__['servers']['separator']}" + f"{host}" + for host in servers[1:] + ], + ) + return ( + node_with_possible_auth, + [f"{scheme}{cls.__annotations__['netloc']['separator']}{host}" for host in servers[1:]], + ) @classmethod def __parse(cls, uri: str) -> Uri: @@ -86,7 +101,7 @@ def __parse(cls, uri: str) -> Uri: result = urlparse(uri) if ";" in result.path: - path, params = result.path.split(";") + path, params = result.path.split(cls.__annotations__["params"]["separator"]) else: path, params = result.path, result.params @@ -135,16 +150,16 @@ def __truediv__(self, other: Union[str, Path]) -> Uri: :param other: Path or string to join """ - sep = "/" + sep = self.__annotations__["path"]["separator"] other = str(other) path = sep.join((self.path, other.strip())) # type: ignore[attr-defined] netloc, servers = self.__get_servers_and_netloc(self.netloc, self.scheme) # type: ignore[attr-defined] res = Uri( # type: ignore self.scheme, # type: ignore[attr-defined] netloc, - path, # type: ignore[arg-type] + path, # type: ignore[attr-defined] self.params, # type: ignore[attr-defined] - self.query, # type: ignore[arg-type] + self.query, # type: ignore[attr-defined] self.fragment, # type: ignore[attr-defined] servers, ) diff --git a/poetry.lock b/poetry.lock index 450bdba..fed1984 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. [[package]] name = "alabaster" @@ -13,13 +13,13 @@ files = [ [[package]] name = "anyio" -version = "4.0.0" +version = "4.1.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = true python-versions = ">=3.8" files = [ - {file = "anyio-4.0.0-py3-none-any.whl", hash = "sha256:cfdb2b588b9fc25ede96d8db56ed50848b0b649dca3dd1df0b11f683bb9e0b5f"}, - {file = "anyio-4.0.0.tar.gz", hash = "sha256:f7ed51751b2c2add651e5747c891b47e26d2a21be5d32d9311dfe9692f3e5d7a"}, + {file = "anyio-4.1.0-py3-none-any.whl", hash = "sha256:56a415fbc462291813a94528a779597226619c8e78af7de0507333f700011e5f"}, + {file = "anyio-4.1.0.tar.gz", hash = "sha256:5a0bec7085176715be77df87fc66d6c9d70626bd752fcc85f57cdbee5b3760da"}, ] [package.dependencies] @@ -28,9 +28,9 @@ idna = ">=2.8" sniffio = ">=1.1" [package.extras] -doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (>=0.22)"] +doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (>=0.23)"] [[package]] name = "apeye" @@ -113,15 +113,18 @@ Sphinx = ">=2.2,<8.0" [[package]] name = "babel" -version = "2.13.0" +version = "2.13.1" description = "Internationalization utilities" optional = false python-versions = ">=3.7" files = [ - {file = "Babel-2.13.0-py3-none-any.whl", hash = "sha256:fbfcae1575ff78e26c7449136f1abbefc3c13ce542eeb13d43d50d8b047216ec"}, - {file = "Babel-2.13.0.tar.gz", hash = "sha256:04c3e2d28d2b7681644508f836be388ae49e0cfe91465095340395b60d00f210"}, + {file = "Babel-2.13.1-py3-none-any.whl", hash = "sha256:7077a4984b02b6727ac10f1f7294484f737443d7e2e66c5e4380e41a3ae0b4ed"}, + {file = "Babel-2.13.1.tar.gz", hash = "sha256:33e0952d7dd6374af8dbf6768cc4ddf3ccfefc244f9986d4074704f2fbd18900"}, ] +[package.dependencies] +setuptools = {version = "*", markers = "python_version >= \"3.12\""} + [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] @@ -238,13 +241,13 @@ redis = ["redis (>=2.10.5)"] [[package]] name = "certifi" -version = "2023.7.22" +version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"}, - {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"}, + {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"}, + {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"}, ] [[package]] @@ -260,101 +263,101 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.3.1" +version = "3.3.2" description = "The Real First Universal Charset Detector. 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terminal" optional = true python-versions = "*" files = [ - {file = "wcwidth-0.2.8-py2.py3-none-any.whl", hash = "sha256:77f719e01648ed600dfa5402c347481c0992263b81a027344f3e1ba25493a704"}, - {file = "wcwidth-0.2.8.tar.gz", hash = "sha256:8705c569999ffbb4f6a87c6d1b80f324bd6db952f5eb0b95bc07517f4c1813d4"}, + {file = "wcwidth-0.2.12-py2.py3-none-any.whl", hash = "sha256:f26ec43d96c8cbfed76a5075dac87680124fa84e0855195a6184da9c187f133c"}, + {file = "wcwidth-0.2.12.tar.gz", hash = "sha256:f01c104efdf57971bcb756f054dd58ddec5204dd15fa31d6503ea57947d97c02"}, ] [[package]] @@ -2695,13 +2652,13 @@ files = [ [[package]] name = "xarray" -version = "2023.10.1" +version = "2023.11.0" description = "N-D labeled arrays and datasets in Python" optional = false python-versions = ">=3.9" files = [ - {file = "xarray-2023.10.1-py3-none-any.whl", hash = "sha256:71ea549e9be6dfeab19c2736acf659967b861aad2397691a80e5fad0c61db2ad"}, - {file = "xarray-2023.10.1.tar.gz", hash = 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base_dict={"dtype": dtype, "dimensions": dimensions}, key="attributes", - exception_types=[tuple, list], + exception_types=[tuple, list, NoneType], ), ] diff --git a/tests/test_cases/test_collections/test_collection_methods.py b/tests/test_cases/test_collections/test_collection_methods.py index 6ac8b98..8dda18a 100644 --- a/tests/test_cases/test_collections/test_collection_methods.py +++ b/tests/test_cases/test_collections/test_collection_methods.py @@ -1,8 +1,10 @@ import uuid + from datetime import datetime, timedelta, timezone from io import BytesIO import hdf5plugin +import numpy as np import pytest from deker_local_adapters import HDF5StorageAdapter, LocalCollectionAdapter @@ -71,7 +73,7 @@ def test_clear_collection( array_collection: Collection, collection_adapter: LocalCollectionAdapter, storage_adapter, - array_params + array_params, ): """Test collection clears its data well. @@ -338,6 +340,10 @@ def test_collection_as_dict( BytesIO, set, type, + str, + dict, + tuple, + list, ), ) def test_wrong_dtype(self, dtype: type, array_schema: ArraySchema): diff --git a/tests/test_cases/test_locking/mpt.py b/tests/test_cases/test_locking/mpt.py index d28a8c4..fd48d73 100644 --- a/tests/test_cases/test_locking/mpt.py +++ b/tests/test_cases/test_locking/mpt.py @@ -27,7 +27,6 @@ array_symlinks_directory="array_symlinks", varray_symlinks_directory="varray_symlinks", uri="/tmp/mp_test/", - graceful_shutdown=True, ) diff --git a/tests/test_cases/test_managers/test_managers.py b/tests/test_cases/test_managers/test_managers.py index 5789ddc..8103602 100644 --- a/tests/test_cases/test_managers/test_managers.py +++ b/tests/test_cases/test_managers/test_managers.py @@ -10,7 +10,7 @@ from deker.arrays import Array, VArray from deker.client import Client from deker.collection import Collection -from deker.errors import DekerFilterError, DekerValidationError, DekerArrayError +from deker.errors import DekerArrayError, DekerFilterError, DekerValidationError from deker.schemas import ( ArraySchema, AttributeSchema, diff --git a/tests/test_cases/test_tools/test_tools.py b/tests/test_cases/test_tools/test_tools.py index a32d607..33a3105 100644 --- a/tests/test_cases/test_tools/test_tools.py +++ b/tests/test_cases/test_tools/test_tools.py @@ -6,12 +6,12 @@ from deker_local_adapters import LocalCollectionAdapter -from deker.tools.array import generate_uid from tests.parameters.collection_params import CollectionParams from deker.collection import Collection from deker.errors import DekerInstanceNotExistsError, DekerMemoryError, DekerValidationError from deker.tools import check_memory, convert_human_memory_to_bytes +from deker.tools.array import generate_uid from deker.tools.time import convert_datetime_attrs_to_iso, convert_iso_attrs_to_datetime