ANSES Ploufragan

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4 repositories

vvv2_display
Public
Create png file of variants proportions in an assembly/reference including CDS positions using output of vadr 1.5.1 (annotation) and vardict-java 1.8.3 (variant calling)
bioinformatics virus annotation display variant-calling
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 20, 2024Nov 20, 2024
PrepMedVet_MinION
Public
galaxy wf detect pathogens in MinION data
bioinformatics detection galaxy minion workflows pathogens prepmedvet
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 15, 2024Nov 15, 2024
SIGffRid
Public
Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses
statistics prediction orthologues promoter transcription-factor-binding-site sigma-factor-binding-site dna-motifs rmes sigffrid bmc-bioinformatics
Perl
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Other
•0•3•0•0•Updated Oct 6, 2020Oct 6, 2020
DUGMO
Public
Detection of unknown genetically modified organisms
machine-learning ngs-analysis gmo unknown-gmo detection
Python
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GNU General Public License v3.0
•0•1•0•0•Updated Apr 5, 2020Apr 5, 2020