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@Craven-Biostat-Lab Mark Craven's Research Lab

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    18 repositories

    • esm-1v-workflow

      Public
      Workflow and supporting code for evaluating every amino acid human protein substitution using ESM-1v.
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • igvf-cvfg-biobank

      Public
      Source code for the Coding Variants Focus Group Biobank Validation anlyses
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • graph-molecular-phenotype-prediction

      Public
      Code accompanying the paper "A graph-based learning approach to predict the effects of gene perturbations on molecular phenotypes" by Jin et al.
      MIT License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • morphology-prediction

      Public
      Predictive modeling of cell morphology: an IGVF project.
      Python
      •
      MIT License
      •0•0•1•0•Updated Jul 16, 2024Jul 16, 2024

    • stringdb_alias

      Public
      A python package for working with string-db.org aliases (gene and protein ID mapping).
      Python
      •
      MIT License
      •0•1•2•0•Updated Dec 6, 2022Dec 6, 2022

    • synmod

      Public
      Temporal model synthesis
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Mar 23, 2022Mar 23, 2022

    • anamod

      Public
      Feature Importance Analysis of Models
      Python
      •
      MIT License
      •4•11•0•0•Updated Mar 23, 2022Mar 23, 2022

    • generalizedtrees

      Public
      Library for tree models: decision trees, model trees, mimic models, etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•4•0•Updated May 3, 2021May 3, 2021

    • SARS-CoV-2-Analysis

      Public
      Python
      •0•2•0•0•Updated Mar 21, 2021Mar 21, 2021

    • data-generators

      Public
      Python package for generating data fit to a dataset
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 13, 2020Jun 13, 2020

    • mihifepe

      Public
      Model Interpretability via Hierarchical Feature Perturbation
      machine-learningartificial-intelligencemodel-interpretation
      Python
      •
      MIT License
      •1•4•3•0•Updated Mar 30, 2020Mar 30, 2020

    • subnetwork_inference_pipeline

      Public
      Subnework Inference Pipeline to run host-virus inference on Condor compute cluster
      Java
      •0•0•0•0•Updated May 24, 2019May 24, 2019

    • evidence_combination

      Public
      Evidence combination for relation extraction
      Python
      •0•0•0•0•Updated May 22, 2019May 22, 2019

    • relation_extraction

      Public
      Model for extracting relations between genes and proteins
      Python
      •0•1•0•0•Updated May 22, 2019May 22, 2019

    • GADGET

      Public
      Genes <-> Text <-> Metabolites
      Python
      •0•1•0•0•Updated Jul 19, 2018Jul 19, 2018

    • subnetwork_inference

      Public
      Source code and data files for subnetwork inference paper
      Python
      •0•2•0•0•Updated Jan 3, 2018Jan 3, 2018

    • PLEIADES-backend

      Public
      OpenEdge ABL
      •1•0•0•0•Updated Apr 15, 2017Apr 15, 2017

    • PLEIADES-frontend

      Public
      JavaScript
      •0•0•0•0•Updated Apr 15, 2017Apr 15, 2017