Skip to content

@EU-ECDC European Centre for Disease Prevention and Control

Change the repository type filter

All

    Repositories list

    24 repositories

    • Respiratory_viruses_weekly_data

      Public
      2•12•2•0•Updated Dec 20, 2024Dec 20, 2024

    • ECDC-Mathematical-Models

      Public
      R
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • Epiphany

      Public
      European Union Public License 1.2
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • hivPlatform

      Public
      R
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • hivEstInfTime

      Public
      R
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • hivModelling

      Public
      R
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • hivEstimatesAccuracy

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • hivEstimatesAccuracyUI

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • hivPlatform_deprecated

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • hivEstimatesAccuracy2

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • BackendCovidApp

      Public
      The backend to the COVID-19 RShiny app (github.com/EU-ECDC/RShinyCovidApp)
      R
      •
      MIT License
      •2•1•0•1•Updated May 22, 2024May 22, 2024

    • RShinyCovidApp

      Public
      The RShiny app is designed to make three features accessible to the user: 1) Forecasts: Current and previous four-week ahead forecasts of the number of cases in each region (and age group when available), 2) Predictors: The risks of secondary transmission and importations estimated by the model, and 3) Scenarios: The impact of changes in transmi…
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • JIACRA2019-2021

      Public
      Fourth joint inter-agency report on integrated analysis of antimicrobial agent consumption and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals in the EU/EEA
      R
      •
      European Union Public License 1.2
      •0•1•0•0•Updated Feb 14, 2024Feb 14, 2024

    • COVID-19_weekly-data

      Public
      R
      •0•0•1•0•Updated Nov 24, 2023Nov 24, 2023

    • epitweetr

      Public
      ECDC Early warning tool using Twitter data
      machine-learningrtwittersparkluceneearly-warning-systemsepidemic-surveillancesignal-detection
      Scala
      •
      European Union Public License 1.2
      •14•56•6•0•Updated Nov 15, 2023Nov 15, 2023

    • EpiReport

      Public
      ECDC in collaboration with Epiconcept developed an R package to create epidemiological reports
      R
      •
      European Union Public License 1.2
      •4•10•0•1•Updated Sep 20, 2023Sep 20, 2023

    • PooledPrevalence

      Public
      A set of tools to help design a laboratory based prevalence study harnessing the pooling of laboratory samples to increase resource efficiency.
      R
      •
      European Union Public License 1.2
      •2•4•5•0•Updated Dec 29, 2020Dec 29, 2020

    • EcdcSupportSnippets

      Public
      Development of various support R code snippets and packages for use for analysis and modelling purposes.
      R
      •
      European Union Public License 1.2
      •2•7•9•1•Updated Jul 16, 2020Jul 16, 2020

    • EcdcColors

      Public
      Development of an R package for using colour palettes following March 2018 ECDC guidelines for presentation of surveillance data
      R
      •
      European Union Public License 1.2
      •5•5•0•0•Updated Jun 5, 2020Jun 5, 2020

    • IPDForecasting

      Public
      Forecasts of invasive pneumococcal disease (IPD). Dynamic regression model based on demography, vaccination coverage, childcare patterns and incidence of IPD and influenza.
      R
      •
      European Union Public License 1.2
      •0•1•1•0•Updated Jan 15, 2020Jan 15, 2020

    • HerpesZosterModel

      Public
      Development of an R package for Herpes Zoster modeling
      R
      •
      European Union Public License 1.2
      •1•0•1•0•Updated Jul 4, 2019Jul 4, 2019

    • MixtureOfExperts

      Public
      A flexible mixture of experts framework, calibrated with expectation maximisation. Options for mixtures of Gaussians, regression models etc.
      R
      •
      European Union Public License 1.2
      •1•0•0•0•Updated May 22, 2019May 22, 2019

    • EpiSignalDetection

      Public
      ECDC in collaboration with Epiconcept developed an R package for monitoring infectious disease surveillance data
      R
      •
      European Union Public License 1.2
      •5•16•1•0•Updated Nov 15, 2018Nov 15, 2018

    • MonthlyMeaslesRubella

      Public
      Development of an R package for production of the monthly measles and rubella surveillance report
      European Union Public License 1.2
      •0•1•0•0•Updated Aug 24, 2018Aug 24, 2018