Repositories list

• breedbase_dockerfile

  Public
  Forked from solgenomics/breedbase_dockerfile

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• mason

  Public
  Mason components for the T3 version of Breedbase

  HTML

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• sgn

  Public
  The code behind the Sol Genomics Network and Cassavabase website

  PLpgSQL

  •

  MIT License

  •36•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• PHG-SCINet

  Public
  Building a wheat PHG on SCINet

  Shell

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• BrAPI-germplasm-search

  Public
  A BrAPI-powered bulk germplasm search API server and website

  JavaScript

  •0•1•0•0•Updated Nov 13, 2024Nov 13, 2024

• kelp

  Public
  The user interface for the kelp database

  1•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• breedbase.R

  Public
  An R package that helps generate breeDBase upload templates

  R

  •

  Other

  •1•2•0•0•Updated Aug 7, 2024Aug 7, 2024

• RShinyDemo

  Public
  R Shiny App Demo for T3 - BrAPI integration

  R

  •0•0•0•0•Updated May 14, 2024May 14, 2024

• breedbase_test

  Public
  Docker-Compose and SGN configs for testing a breedbase image

  Shell

  •0•0•0•0•Updated May 14, 2024May 14, 2024

• BrAPI.R

  Public
  Simple wrapper functions for making BrAPI requests

  R

  •

  Other

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• breedbase

  Public
  The project structure for T3/Breedbase instances. This repository includes helper scripts, config files and mount directories for running T3/Breedbase instances of wheat, oat and/or barley.

  PLpgSQL

  •0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

• PHGv2

  Public
  Practical Haplotype Graph from Katie Jordon with 473 accessions aligned to CSv2.1

  Perl

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• ontology-scripts

  Public
  Utility scripts for converting between trait ontology file formats

  Perl

  •1•0•0•0•Updated Nov 17, 2023Nov 17, 2023

• DataFromT3UsingBrAPI

  Public
  R

  •

  MIT License

  •1•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• loading-scripts

  Public
  Scripts for loading T3 data into a breeDBase instance

  Perl

  •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

• ibp-wheat-traits

  Public
  2•0•0•0•Updated Feb 28, 2023Feb 28, 2023

• docker-r-python

  Public
  A Docker image with R and Python

  Dockerfile

  •0•0•0•0•Updated Oct 3, 2022Oct 3, 2022

• T3

  Public
  The Triticeae Toolbox

  PHP

  •1•1•0•0•Updated Sep 13, 2022Sep 13, 2022

• ibp-barley-traits

  Public
  1•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• ibp-oat-traits

  Public
  Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO

  1•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• brapi_sync_dockerfile

  Public
  A dockerfile for the IntegratedBreedingPlatform/brapi-sync project

  Dockerfile

  •0•0•0•0•Updated Oct 13, 2021Oct 13, 2021

• postgres_dockerfile

  Public archive
  docker file for breedbase postgresql instance

  PLpgSQL

  •2•0•0•0•Updated Sep 8, 2021Sep 8, 2021

• triticum

  Public
  mason files for the triticum database for the Jannink lab

  MIT License

  •1•0•0•0•Updated Jan 28, 2021Jan 28, 2021

• avena

  Public archive
  mason files for the avena database for the Jannink lab

  JavaScript

  •

  MIT License

  •1•0•0•0•Updated Jun 12, 2020Jun 12, 2020

• PHG

  Public
  Practical Haplotype Graph

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 1, 2019Jul 1, 2019

• BrApp

  Public
  BrAPI application

  0•0•0•0•Updated Feb 6, 2018Feb 6, 2018