Repositories list

• funlib.show.neuroglancer

  Public
  Scripts and helpers for the neuroglancer WebGL viewer.

  Python

  •13•1•0•1•Updated Jan 27, 2025Jan 27, 2025

• ClusterWrap

  Public
  Wrappers around dask-jobqueue functions for specific clusters

  Python

  •

  MIT License

  •6•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• fiji-friends

  Public
  fiji macro scripts and other helpers, as needed

  Python

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• funlib.persistence

  Public
  Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

  Python

  •

  MIT License

  •11•0•0•0•Updated May 17, 2024May 17, 2024

• streamline

  Public
  E11 for of BigStream - Tools for distributed alignment of massive images

  Python

  •

  MIT License

  •21•0•0•0•Updated May 13, 2024May 13, 2024

• scale_pyramid

  Public
  Script to generate a scale pyramid for zarr/N5 datasets.

  Python

  •

  MIT License

  •3•1•0•0•Updated Mar 19, 2024Mar 19, 2024

• dacapo

  Public
  Python

  •6•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• pybdv

  Public
  python tools for BigDataViewer

  Python

  •

  MIT License

  •7•0•0•0•Updated Apr 2, 2023Apr 2, 2023

• lsd

  Public
  🌈

  Python

  •

  MIT License

  •34•0•0•0•Updated Dec 16, 2022Dec 16, 2022

• combinatorics_dash

  Public
  n choose k options and trends, for calculating ideal math x biological x imaging constraints

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 17, 2022Nov 17, 2022

• well-plate-assay

  Public
  Code for processing well plate assays

  Jupyter Notebook

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• funlib.run

  Public
  Python wrapper for submitting jobs via bsub with the option to do so in a container environment.

  Python

  •4•0•0•0•Updated Oct 27, 2021Oct 27, 2021