Fred Hutch Data Science Lab

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131 repositories

UMich_ITN_Workshop
Public
An OTTR website for resources and activities for the ITN workshops at UMich 2025
itn-workshop
CSS
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MIT License
•0•0•2•0•Updated Feb 26, 2025Feb 26, 2025
GitHub_Automation_for_Scientists
Public
This course walks through why's and the how's for using automation to boost scientific software development process.
automation templates activities troubleshooting github-actions itn-course audience-software-developers category-software-dev
CSS
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Creative Commons Attribution 4.0 International
•1•1•5•1•Updated Feb 26, 2025Feb 26, 2025
Choosing_Genomics_Tools
Public
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
data-processing genomic-data data-interpretation itn-course audience-researchers category-fundamentals-tools-resources resources-and-tools
TeX
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Creative Commons Attribution 4.0 International
•6•8•27•2•Updated Feb 26, 2025Feb 26, 2025
intermediate_r_slides
Public
HTML
•0•0•0•0•Updated Feb 26, 2025Feb 26, 2025
metricminer-dashboard
Public template
A template dashboard that helps you display your metricmined data in no time!
R
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MIT License
•0•1•8•1•Updated Feb 26, 2025Feb 26, 2025
Clinical_Data_Management
Public
CSS
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MIT License
•1•0•4•4•Updated Feb 24, 2025Feb 24, 2025
intro_to_sql
Public
Intro to SQL Course for Fred Hutch Winter 2025
HTML
•0•0•0•1•Updated Feb 24, 2025Feb 24, 2025
Containers_for_Scientists
Public
A course to introduce Docker for research purposes
docker containers itn-course future-course
CSS
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Creative Commons Attribution 4.0 International
•1•1•0•1•Updated Feb 24, 2025Feb 24, 2025
GDSCN_BioDIGS_Soil
Public
This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R.
course module anvil gdscn biodigs
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•0•Updated Feb 24, 2025Feb 24, 2025
Clinical_Data_Analysis
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•1•Updated Feb 21, 2025Feb 21, 2025
Ethical_Data_Handling_for_Cancer_Research
Public
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
security data privacy research risk hipaa data-sharing ethics phi pii
TeX
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Creative Commons Attribution 4.0 International
•0•1•13•0•Updated Feb 21, 2025Feb 21, 2025
Overleaf_and_LaTeX_for_Scientific_Articles
Public
This course is designed to help researchers and trainees write scientific articles using LaTeX and Overleaf.
latex templates typesetting collaboration overleaf arxiv scientific-publications getting-help itn-course audience-leaders
CSS
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Creative Commons Attribution 4.0 International
•0•1•3•0•Updated Feb 21, 2025Feb 21, 2025
NIH_Data_Sharing
Public
Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
data-storage policy budgeting data-management data-sharing nih grant-proposals grant-submission hutch-course itn-course
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•2•Updated Feb 21, 2025Feb 21, 2025
DaSEH
Public
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
data-science course tidyverse public-health beginner beginner-friendly r-programming niehs environmental-health beginner-programming
HTML
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MIT License
•1•0•25•1•Updated Feb 20, 2025Feb 20, 2025
metricminer
Public
R package that digs up data that matters from APIs, making it dashboard-ready
edtech-software
R
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MIT License
•0•2•34•3•Updated Feb 20, 2025Feb 20, 2025
itn-training-metrics
Public
A "dashboard' displaying the ITN training metrics in plots and tables
MIT License
•0•0•0•1•Updated Feb 19, 2025Feb 19, 2025
AnVIL_Outreach_Dashboard
Public
incomplete
CSS
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Creative Commons Attribution 4.0 International
•0•0•2•1•Updated Feb 19, 2025Feb 19, 2025
GDSCN_BioDIGS_Book
Public
Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.
tutorial course anvil r-programming gdscn biodigs
CSS
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Feb 19, 2025Feb 19, 2025
AnVIL_Collection
Public
📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
website anvil content-library gdscn edtech-software
R
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Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Feb 18, 2025Feb 18, 2025
GDSCN_SARS_RStudio_on_AnVIL
Public
Lab module and lectures for identifying phylogenetic history of SARS variants using R
course module anvil phylogenetic-analysis sars-cov-2 gdscn
CSS
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Creative Commons Attribution 4.0 International
•0•0•3•0•Updated Feb 18, 2025Feb 18, 2025
BioDIGSData
Public
Data Package for BioDIGS Project
gdscn edtech-software biodigs
R
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MIT License
•2•0•0•0•Updated Feb 17, 2025Feb 17, 2025
AnVIL_Urban_Genomics_PCA
Public
Lab module and lectures for exploring PCA using feral pigeon populations
course genomics pca anvil urban-data-science
CSS
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Creative Commons Attribution 4.0 International
•0•0•2•1•Updated Feb 14, 2025Feb 14, 2025
AnVIL_Demos
Public
⏱ 30-minute demos and tutorials from our live AnVIL series
cloud course research module genomics cloud-computing anvil
CSS
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Creative Commons Attribution 4.0 International
•1•0•1•1•Updated Feb 14, 2025Feb 14, 2025
AnVIL_Book_Epigenetics_Intro
Public
An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.
module epigenetics anvil ucsc-browser human-genomes course
CSS
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Creative Commons Attribution 4.0 International
•3•0•2•2•Updated Feb 14, 2025Feb 14, 2025
metricminer.org
Public
A website for metricminer
HTML
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MIT License
•0•0•0•0•Updated Feb 14, 2025Feb 14, 2025
Moffitt_ITN_Workshop
Public
itn-workshop
CSS
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MIT License
•0•0•0•0•Updated Feb 13, 2025Feb 13, 2025
curricula_counter
Public
R
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MIT License
•0•0•0•0•Updated Feb 13, 2025Feb 13, 2025
AnVILplot
Public
Color Palette for AnVIL
anvil edtech-software
R
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Creative Commons Attribution 4.0 International
•0•0•1•1•Updated Feb 12, 2025Feb 12, 2025
Intermediate_Python
Public
JavaScript
•0•0•0•0•Updated Feb 1, 2025Feb 1, 2025
Tools_for_Reproducible_Workflows_in_R
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•12•1•Updated Feb 1, 2025Feb 1, 2025