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    12 repositories

    • PHENO

      Public
      BrAPI endpoint running virtuoso to serve SparQL queries
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • ontobrapi-admin

      Public
      Administer call structures
      JavaScript
      •0•0•2•0•Updated Dec 3, 2024Dec 3, 2024

    • ontobrapi-web

      Public
      Docker file for the webserver running on Node JS
      JavaScript
      •
      GNU General Public License v3.0
      •0•2•4•3•Updated Dec 3, 2024Dec 3, 2024

    • RDF_Adapter

      Public
      An adapter for Biocypher that imports MIAPPE data in RDF
      Python
      •
      Other
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • ontobrapi-brapi

      Public
      Portion of the ontobrapi module responsible for exporting data as BrAPI Calls
      JavaScript
      •0•0•1•0•Updated Nov 12, 2024Nov 12, 2024

    • miRPursuit

      Public
      Analysis workflow for smallRNA sequenced data
      srnapipelineplantrnanucleic-acids
      Shell
      •
      GNU General Public License v3.0
      •1•4•6•0•Updated May 29, 2023May 29, 2023

    • sRNA-Portal-workflow

      Public
      The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and allows the automated sequential application of data processing modules for anal…
      JavaScript
      •
      GNU General Public License v3.0
      •1•1•35•11•Updated May 18, 2023May 18, 2023

    • PHENO-old

      Public
      nodeJS implementation of Plant Breading API
      api-servernodejsdatabasebrapiplant-breading-api
      JavaScript
      •
      GNU General Public License v3.0
      •2•3•23•16•Updated Dec 22, 2022Dec 22, 2022

    • beacon

      Public
      Beacon like server to receive pings and communicate the status of other machines.
      JavaScript
      •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • forgen-services

      Public
      A services deployment server
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 21, 2020Sep 21, 2020

    • gff2graph

      Public
      Transform a sorted .gff (genome feature file) into a graph with genes connected to their neighbor upstream gene
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 19, 2017Dec 19, 2017

    • mergeTables

      Public
      Simple program to merges tables with a common column.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 7, 2017Sep 7, 2017