Repositories list

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationpathwaysgeneontology+ 3noctua-modelsgo-camontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •3•11•34•2•Updated Mar 6, 2025Mar 6, 2025

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlgene-ontology+ 5obogeneontologyfunctional-annotationobofoundryontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •40•228•701•49•Updated Mar 6, 2025Mar 6, 2025

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  ontologygenescuration+ 4geneontologyfunctional-annotationannotationannotations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•38•438•2•Updated Mar 6, 2025Mar 6, 2025

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  documentationgene-ontologygeneontology+ 2yamlmetadata

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •89•46•238•46•Updated Mar 6, 2025Mar 6, 2025

• neo

  Public
  noctua entity ontology

  annotationobogeneontology+ 3gafgo-camontology

  Perl

  •2•9•31•4•Updated Mar 6, 2025Mar 6, 2025

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •10•7•29•13•Updated Mar 5, 2025Mar 5, 2025

• wc-gocam-viz

  Public
  Web component to visualize GO-CAMs

  geneontologygo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•16•0•Updated Mar 3, 2025Mar 3, 2025

• go-hosted-wiki

  Public
  Stand up GO wiki from current backup resources.

  Shell

  •1•0•0•0•Updated Mar 3, 2025Mar 3, 2025

• gocam-py

  Public
  Draft data model for GO-CAMs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•4•1•Updated Mar 3, 2025Mar 3, 2025

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  pathwaysgeneontologybiopax+ 2go-camontology

  Java

  •0•9•107•0•Updated Feb 27, 2025Feb 27, 2025

• annotation-query

  Public
  This is a repository for doing the queries like go-annotation, but with nobody following it

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•6•0•Updated Feb 27, 2025Feb 27, 2025

• minerva

  Public
  geneontologygafnoctua+ 2noctua-modelsconverter

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •8•6•61•9•Updated Feb 26, 2025Feb 26, 2025

• pipeline-neo

  Public
  A new version of the NEO load pipeline for the new context

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 22, 2025Feb 22, 2025

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3genesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•30•173•25•Updated Feb 21, 2025Feb 21, 2025

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  geneontologypipeline

  BSD 3-Clause "New" or "Revised" License

  •5•5•86•1•Updated Feb 19, 2025Feb 19, 2025

• go-reaction-logic

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• noctua-standard-annotations

  Public
  TypeScript

  •0•0•16•0•Updated Feb 12, 2025Feb 12, 2025

• noctua-form-base

  Public
  librarygeneontologygo-cam+ 1annotations

  TypeScript

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• helpdesk

  Public
  The Gene Ontology Helpdesk

  gohelpdeskontology+ 8gene-ontologygenesontologiescurationgeneontologyfunctional-annotationnoctua+ 1

  6•16•14•0•Updated Feb 6, 2025Feb 6, 2025

• noctua-alliance-pathway-preview

  Public
  TypeScript

  •0•0•4•0•Updated Feb 6, 2025Feb 6, 2025

• pipeline-from-goa

  Public
  The new GO pipeline that runs after GOA has made QC file products available.

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• gopreprocess

  Public
  Python

  •

  MIT License

  •1•3•1•0•Updated Jan 29, 2025Jan 29, 2025

• go-technical-announcements

  Public
  Follow this repository to stay up-to-date on important public API and data changes for the Gene Ontology. Any developer or site that depends on the GO as an API or data source should follow this repository.

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 27, 2025Jan 27, 2025

• pipeline-raw-go-cam

  Public
  [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•0•Updated Jan 10, 2025Jan 10, 2025

• web-gocam

  Public
  GO-CAM site as an Angular 2+ Application

  annotationsgeneontologynoctua+ 2noctua-modelsgo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•11•0•Updated Jan 10, 2025Jan 10, 2025

• web-components

  Public
  EXPERIMENTAL Unified web component library

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Jan 7, 2025Jan 7, 2025

• go-fastapi

  Public
  Python

  •3•6•7•1•Updated Jan 6, 2025Jan 6, 2025

• obographs

  Public
  Basic and Advanced OBO Graphs: specification and reference implementation

  jsongraphsowl+ 6gene-ontologyontologiesgeneontologyobofoundryontology-standardsontology

  Java

  •12•64•50•2•Updated Dec 20, 2024Dec 20, 2024

• noctua-landing-page

  Public
  geneontologynoctuanoctua-models+ 1go-cam

  TypeScript

  •0•1•20•8•Updated Dec 10, 2024Dec 10, 2024

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  HCL

  •1•0•4•1•Updated Dec 5, 2024Dec 5, 2024