Repositories list

• ABCD

  Public
  R

  •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• ML-Bench

  Public
  The Official Repo of ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)

  code-generationgpt-4llm

  Python

  •

  MIT License

  •9•356•0•0•Updated Nov 19, 2024Nov 19, 2024

• MIMIR

  Public
  Python

  •0•2•0•0•Updated Nov 10, 2024Nov 10, 2024

• ProteinGraph_construction

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• cbb752b25

  Public
  CSS

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• BC-Design

  Public
  BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding

  protein-structurecomputational-biologyprotein+ 2protein-surfaceinverse-design

  Python

  •

  Apache License 2.0

  •0•6•2•0•Updated Oct 30, 2024Oct 30, 2024

• PPT

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Sep 16, 2024Sep 16, 2024

• GraphPartition_SBGNN

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Aug 20, 2024Aug 20, 2024

• entexBERT-paper

  Public
  Python

  •0•1•0•0•Updated Aug 17, 2024Aug 17, 2024

• chronODE

  Public
  Jupyter Notebook

  •0•3•0•0•Updated Aug 13, 2024Aug 13, 2024

• step-back-profiling

  Public
  llmspersonalized-generation

  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Aug 2, 2024Aug 2, 2024

• cbb752b23

  Public
  CSS

  •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• shiny-dim-reduction

  Public
  This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

  R

  •0•2•0•0•Updated Jul 28, 2024Jul 28, 2024

• LatentDAG

  Public
  Jupyter Notebook

  •

  Other

  •0•3•0•0•Updated Jul 22, 2024Jul 22, 2024

• MolLM

  Public
  A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations

  Python

  •1•20•2•0•Updated Jul 19, 2024Jul 19, 2024

• GenAI4Drug

  Public
  moleculeproteindrug-discovery+ 1genai

  4•60•0•0•Updated Jul 18, 2024Jul 18, 2024

• Struc-Bench

  Public
  llm

  Python

  •5•43•5•0•Updated Jul 3, 2024Jul 3, 2024

• BioCoder

  Public
  Jupyter Notebook

  •12•38•0•0•Updated Jul 1, 2024Jul 1, 2024

• LICENSE

  Public
  License that applies to Gerstein Lab repositories.

  0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

• MedAgents

  Public
  medical-applicationmedical-question-answeringllm+ 2llm-agentllm-agents

  Python

  •31•216•0•0•Updated May 27, 2024May 27, 2024

• PsychENCODE_SingleCell_Integrative

  Public
  Integrative Analyses across 388 human brain samples at single-cell resolution

  R

  •

  Other

  •2•12•4•0•Updated Mar 21, 2024Mar 21, 2024

• PLIGHT

  Public
  Privacy Leakage through Inference across Genotypic HMM Trajectories

  privacygenomics

  Python

  •

  Other

  •0•1•0•0•Updated Mar 20, 2024Mar 20, 2024

• fmgene

  Public
  MIT License

  •0•0•0•0•Updated Mar 17, 2024Mar 17, 2024

• MOBI

  Public
  Shell

  •

  MIT License

  •0•2•0•0•Updated Jan 31, 2024Jan 31, 2024

• Musevo

  Public
  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

• ThermoNet

  Public
  ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

  Python

  •

  GNU General Public License v3.0

  •20•109•1•0•Updated Dec 20, 2023Dec 20, 2023

• idash23bc

  Public
  Solution to Track 2 of the 2023 iDASH competition

  JavaScript

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• Factual_ClinicalSumm

  Public
  Python

  •1•1•0•0•Updated Jul 15, 2023Jul 15, 2023

• PeoplePage

  Public
  HTML

  •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

• MEDIQA-Chat-2023

  Public
  MEDIQA-Chat-2023 GersteinLab solution

  Jupyter Notebook

  •0•2•0•0•Updated May 9, 2023May 9, 2023