Repositories list

• edimo

  Public
  Repository with guidelines, instructions and scripts for the variant annotation platform of the Hellenic Network for Molecular Oncology

  R

  •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• star_protocols_wes3x

  Public
  Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers

  Shell

  •

  GNU General Public License v3.0

  •6•9•0•0•Updated Oct 18, 2024Oct 18, 2024

• misc-guides

  Public
  Miscellaneous tutorials and guidelines

  0•1•0•0•Updated Jul 16, 2024Jul 16, 2024

• vermilion-snapper-assembly

  Public
  Pipeline for the assembly of Vermilion snapper using HiFi+HiC+WGS

  R

  •0•2•0•0•Updated Jun 29, 2024Jun 29, 2024

• metaseqr2-tutorial

  Public
  R

  •0•7•0•0•Updated Mar 12, 2024Mar 12, 2024

• genomics-facility-processes

  Public
  R

  •0•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• meta-caller

  Public
  Python

  •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

• greek-covid19-assembly

  Public
  Process and tutorial for de novo (potentially guided) SARS-CoV-2 genome assembly from samples derived from Greek patients. Also part of the pMedGR initiative.

  1•2•0•0•Updated Jan 14, 2021Jan 14, 2021

• metagen

  Public
  16s rRna analysis visualization

  HTML

  •2•0•0•0•Updated Dec 12, 2020Dec 12, 2020

• tvc_local_pipeline

  Public
  Shell

  •0•0•0•0•Updated Sep 9, 2020Sep 9, 2020