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    13 repositories

    • testa-organoid-nuclei

      Public
      Nuclear Segmentation on organoid slices
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • kymograph-synthesis

      Public
      A repository for generating synthetic kymographs
      Python
      •0•1•0•0•Updated Jan 9, 2025Jan 9, 2025

    • cellmap_pipelines

      Public
      Utilities to run CellMap training and fine-tuning
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • harschnitz-organoid-nuclei

      Public
      Nuclear segmentation and quantification of organoid slices
      internalorganoidsnuclear-segmentationharschnitz
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • erdmann-cell-counting

      Public
      Counting of DAPI-stained cells embedded in gel
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • chabot_2024

      Public
      Radial shape analysis for Chabot 2024
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • headless_fiji

      Public
      A proof of concept pipeline to download, update and run Fiji in headless mode.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jun 28, 2024Jun 28, 2024

    • advanced-scripting

      Public
      ImageJ Macro
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • competitive_binding

      Public
      A notebook to fit a protein competitive binding model to a protein fluorescence anisotropy assay.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • pasteur_n2v

      Public
      Instructions for DL restoration workshop.
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • pasteur_n2v_scripts

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • .github

      Public
      Welcome page of the NoBIAS facility
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 26, 2023May 26, 2023

    • nobias-fht.github.io

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 24, 2023May 24, 2023