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    216 repositories

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•8•Updated Jan 20, 2025Jan 20, 2025

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •0•1•0•6•Updated Jan 20, 2025Jan 20, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•6•Updated Jan 20, 2025Jan 20, 2025

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•14•Updated Jan 20, 2025Jan 20, 2025

    • genomel_pipelines

      Public
      GenoMEL pipelines in Bionimbus
      Python
      •
      Apache License 2.0
      •1•1•0•81•Updated Jan 20, 2025Jan 20, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •7•8•0•198•Updated Jan 20, 2025Jan 20, 2025

    • gen3-ui-component

      Public
      Base UI component in gen3
      JavaScript
      •
      Apache License 2.0
      •2•3•2•12•Updated Jan 19, 2025Jan 19, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•79•Updated Jan 18, 2025Jan 18, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •5•2•0•14•Updated Jan 17, 2025Jan 17, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •67•41•99•93•Updated Jan 17, 2025Jan 17, 2025

    • .github

      Public template
      For default health files
      Apache License 2.0
      •2•0•0•10•Updated Jan 17, 2025Jan 17, 2025

    • argo-wrapper

      Public
      Wrapping Argo into nice API for VADC GWAS app
      vadc
      Python
      •
      Apache License 2.0
      •3•3•0•6•Updated Jan 17, 2025Jan 17, 2025

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jan 17, 2025Jan 17, 2025

    • docker-nginx

      Public
      Official NGINX Dockerfiles
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1.7k•0•0•1•Updated Jan 17, 2025Jan 17, 2025

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •10•16•1•8•Updated Jan 17, 2025Jan 17, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•0•0•12•Updated Jan 17, 2025Jan 17, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.5k•1•0•40•Updated Jan 17, 2025Jan 17, 2025

    • ecs-ws-sidecar

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•2•Updated Jan 17, 2025Jan 17, 2025

    • staging-HEAL-platform-documentation

      Public
      staging and dev area for public documentation for the HEAL platform
      HTML
      •8•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•181•Updated Jan 17, 2025Jan 17, 2025

    • bdc-data-commons

      Public
      BDC using Gen 3.2
      TypeScript
      •
      Apache License 2.0
      •0•0•0•6•Updated Jan 17, 2025Jan 17, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •44•29•43•17•Updated Jan 17, 2025Jan 17, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•5•Updated Jan 16, 2025Jan 16, 2025

    • pdp_dictionary

      Public
      The data dictionary for the Prometheus Data Platform (PDP).
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • datadictionary

      Public
      Gen3 Generic Data dictionary
      gen3-data-dictionary
      Python
      •
      Apache License 2.0
      •37•2•7•3•Updated Jan 16, 2025Jan 16, 2025

    • google-bucket-manifest

      Public
      Repos to store CDIS Google dataflow templates
      Python
      •
      Apache License 2.0
      •0•0•0•74•Updated Jan 16, 2025Jan 16, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •139•0•0•1•Updated Jan 16, 2025Jan 16, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •17•11•22•17•Updated Jan 16, 2025Jan 16, 2025

    • pelican

      Public
      Sower jobs for PFB export & import
      gen3gen3-pfbgen3-sower-job
      Python
      •
      Apache License 2.0
      •4•3•0•7•Updated Jan 15, 2025Jan 15, 2025

    • prometheus-data-platform

      Public template
      Gen3 based UI for Prometheus Data Platform
      TypeScript
      •
      Apache License 2.0
      •15•0•0•3•Updated Jan 15, 2025Jan 15, 2025