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Cannot install gfarm2fs package #13

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shuuji3 opened this issue Dec 17, 2020 · 0 comments
Open

Cannot install gfarm2fs package #13

shuuji3 opened this issue Dec 17, 2020 · 0 comments

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@shuuji3
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shuuji3 commented Dec 17, 2020

When installing the gfarm2fs package, the following error is shown and could not install the package:

> spack install gfarm2fs
==> Warning: Missing a source id for gfarm@main
==> Warning: Missing a source id for gfarm2fs@main
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/attr-2.4.48-vl3z5erpkwrfjc3usa2kk7xoa3q4kmbr
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/libsigsegv-2.12-w3z5jc7x7nhe7rujz6yecrouh2h373op
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/berkeley-db-18.1.40-wao3awlpcckkumcmj74kgp2do6gco2jl
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/pkgconf-1.7.3-5vgnu5oaf47fyd3m5qqmutptv3dnvyvb
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/libiconv-1.16-mnoxfcun4wg6wjf6g35ib7jgx5uwn4c7
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/xz-5.2.5-kaqi5asulidftq5hhc3soc2yasgumnyy
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/zlib-1.2.11-oomvh7mltnemi7zvsinrtltotwwhhrow
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/m4-1.4.18-k5lq6bl4e3a4ys6xtqcrftsh4mdpnvlr
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/ncurses-6.2-n6qfkjd32h54p47dmq4idrz7s62eyzog
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/tar-1.32-5pxvpbrp3hmw2yiq2emhdy3iakx55al4
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/diffutils-3.7-xx4o3se3zahyaukpphss6wlqef5xmlzo
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/libxml2-2.9.10-en6fyrfwsbs2epjanp6e6fqxuthmilo7
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/libtool-2.4.6-3e7y3qt5cwr3ryepqqhepobni3jyilco
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/readline-8.0-ljdigytz2ze6tz6hnxl3q5retxfdlipf
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/bzip2-1.0.8-uwxmw2akmiwwz73jk5wxmdo2drad6g34
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/gdbm-1.18.1-ztfcvykx732yljvplhrel2u5x626c65s
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/gettext-0.21-3l5f73q6ho3f46cfncwtycjld3ekgkan
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/perl-5.32.0-67o3bzsw2lab3hzojcfch2gtcxdr4kz5
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/openssl-1.1.1h-24e6zs355vorvvef3c2l7hdu2h3wqb74
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/autoconf-2.69-pto3e26fsjuxndh3mob3l3xaopu4mkye
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/postgresql-11.2-iu4thri37rbg4jyvsjeapt26t65zkjar
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/automake-1.16.2-ytdgmeiquytw2i2sutuyhwk4i7iuaad7
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/gfarm-main-ergib3dqflt4lgx6kcgb357phwr6xms5
[+] /home/shuuji3/src/spack/opt/spack/linux-ubuntu20.04-zen/gcc-9.3.0/acl-2.2.53-d3gg343ug45thbxjgz5qxd2h22hcsmh5
==> Installing gfarm2fs-main-wo35glilkqgg3hzqkneg46pcuo5m5tuk
==> No binary for gfarm2fs-main-wo35glilkqgg3hzqkneg46pcuo5m5tuk found: installing from source
==> gfarm2fs: Executing phase: 'autoreconf'
==> gfarm2fs: Executing phase: 'configure'
==> gfarm2fs: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j16'

3 errors found in build log:
     187    mv -f .deps/xattr.Tpo .deps/xattr.Po
     188    /bin/bash ./libtool  --tag=CC   --mode=link /home/shuuji3/src/spac
            k/lib/spack/env/gcc/gcc -Wall -g -O2  -L/home/shuuji3/src/spack/op
            t/spack/linux-ubuntu20.04-zen/gcc-9.3.0/gfarm-main-ergib3dqflt4lgx
            6kcgb357phwr6xms5/lib -o gfarm2fs_fix_acl gfarm2fs_fix_acl.o acl.o
             id.o xattr.o gfarm_config.o  -lfuse -lgfarm -lgfarm
     189    libtool: link: /home/shuuji3/src/spack/lib/spack/env/gcc/gcc -Wall
             -g -O2 -o gfarm2fs_fix_acl gfarm2fs_fix_acl.o acl.o id.o xattr.o 
            gfarm_config.o  -L/home/shuuji3/src/spack/opt/spack/linux-ubuntu20
            .04-zen/gcc-9.3.0/gfarm-main-ergib3dqflt4lgx6kcgb357phwr6xms5/lib 
            -lfuse -lgfarm
     190    mv -f .deps/gfarm2fs.Tpo .deps/gfarm2fs.Po
     191    /bin/bash ./libtool  --tag=CC   --mode=link /home/shuuji3/src/spac
            k/lib/spack/env/gcc/gcc -Wall -g -O2  -L/home/shuuji3/src/spack/op
            t/spack/linux-ubuntu20.04-zen/gcc-9.3.0/gfarm-main-ergib3dqflt4lgx
            6kcgb357phwr6xms5/lib -o gfarm2fs gfarm2fs.o acl.o id.o replicate.
            o open_file.o xattr.o gfarm_config.o  -lfuse -lgfarm -lgfarm
     192    libtool: link: /home/shuuji3/src/spack/lib/spack/env/gcc/gcc -Wall
             -g -O2 -o gfarm2fs gfarm2fs.o acl.o id.o replicate.o open_file.o 
            xattr.o gfarm_config.o  -L/home/shuuji3/src/spack/opt/spack/linux-
            ubuntu20.04-zen/gcc-9.3.0/gfarm-main-ergib3dqflt4lgx6kcgb357phwr6x
            ms5/lib -lfuse -lgfarm
  >> 193    /usr/bin/ld: gfarm2fs.o: undefined reference to symbol 'pthread_rw
            lock_destroy@@@@GLIBC_2.2.5'
  >> 194    /usr/bin/ld: /lib/x86_64-linux-gnu/libpthread.so.0: error adding s
            ymbols: DSO missing from command line
  >> 195    collect2: error: ld returned 1 exit status
     196    make[2]: *** [Makefile:508: gfarm2fs] Error 1
     197    make[2]: Leaving directory '/tmp/shuuji3/spack-stage/spack-stage-g
            farm2fs-main-wo35glilkqgg3hzqkneg46pcuo5m5tuk/spack-src'
     198    make[1]: *** [Makefile:644: all-recursive] Error 1
     199    make[1]: Leaving directory '/tmp/shuuji3/spack-stage/spack-stage-g
            farm2fs-main-wo35glilkqgg3hzqkneg46pcuo5m5tuk/spack-src'
     200    make: *** [Makefile:403: all] Error 2

See build log for details:
  /tmp/shuuji3/spack-stage/spack-stage-gfarm2fs-main-wo35glilkqgg3hzqkneg46pcuo5m5tuk/spack-build-out.txt
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