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odgi 0.7.2 - Radler
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@subwaystation subwaystation released this 24 May 12:55
· 420 commits to master since this release
v0.7.2
d4de3c8

Buildable Source Tarball: odgi-v0.7.2.tar.gz

This lemon beer release comes with lot's of new features and some bug fixes:

  • Fixed libbf compilation issue.
  • The stepindex throws an error if it was fed an empty path.
  • xp index: Delete all temporary files after index generation.
  • More stringent node identifier validation when parsing from GFA.
  • odgi groom: Added a reference-based mode.
  • odgi sort: rPG-SGD allows to globally sort by given references.
  • odgi untangle: We can select gene order groups for plotting with gggenes.
  • New subcommand odgi procbed: Pprocrustes-BED: Intersect and adjust BED interval into PanSN-defined path subranges. Lift BED files into graphs produced by odgi extract. Uses path range information in the path names.
  • New subcommand odgi inject: Inject BED interval ranges as paths in the graph.
  • New subcommand odgi flip: Flip (reverse complement) paths to match the graph.
  • Docs:
    • Sync it with the changes above
    • Added a new tutorial of how to inject gene arrows with odgi untangle.
    • Added a section explaining how to apply the rPG-SGD.

Full Changelog: v0.7.1...v0.7.2

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