From bc902c6f9a2505dc6258341db1d0cca1441e4f58 Mon Sep 17 00:00:00 2001 From: parashardhapola Date: Fri, 30 Jul 2021 13:37:27 +0200 Subject: [PATCH] updated tests for run_umap API change --- scarf/tests/fixtures_datastore.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scarf/tests/fixtures_datastore.py b/scarf/tests/fixtures_datastore.py index d0648fb..7177328 100644 --- a/scarf/tests/fixtures_datastore.py +++ b/scarf/tests/fixtures_datastore.py @@ -59,7 +59,7 @@ def paris_clustering_balanced(make_graph, datastore): @pytest.fixture(scope="class") def umap(make_graph, datastore): - datastore.run_umap(fit_n_epochs=50, tx_n_epochs=20) + datastore.run_umap(n_epochs=50) yield np.array( [datastore.cells.fetch("RNA_UMAP1"), datastore.cells.fetch("RNA_UMAP2")] ).T