diff --git a/patchwork/common/utils/input_parsing.py b/patchwork/common/utils/input_parsing.py index 94b5771b..45c2e904 100644 --- a/patchwork/common/utils/input_parsing.py +++ b/patchwork/common/utils/input_parsing.py @@ -2,7 +2,6 @@ import json from collections.abc import Iterable, Mapping -from shutil import posix from typing_extensions import AnyStr, Union @@ -72,7 +71,8 @@ def parse_to_list( rv.append(stripped_value) return rv -def parse_to_dict(possible_dict, limit = -1): + +def parse_to_dict(possible_dict, limit=-1): if possible_dict is None and limit == 0: return None diff --git a/patchwork/steps/FixIssue/FixIssue.py b/patchwork/steps/FixIssue/FixIssue.py index bcb81e7a..0f7d419a 100644 --- a/patchwork/steps/FixIssue/FixIssue.py +++ b/patchwork/steps/FixIssue/FixIssue.py @@ -1,10 +1,8 @@ -import difflib import re from pathlib import Path from typing import Any, Optional -from git import Repo, InvalidGitRepositoryError -from patchwork.logger import logger +from git import InvalidGitRepositoryError, Repo from openai.types.chat import ChatCompletionMessageParam from patchwork.common.client.llm.aio import AioLlmClient @@ -15,6 +13,7 @@ AnalyzeImplementStrategy, ) from patchwork.common.tools import CodeEditTool, Tool +from patchwork.logger import logger from patchwork.step import Step from patchwork.steps.FixIssue.typed import FixIssueInputs, FixIssueOutputs @@ -100,7 +99,7 @@ def is_stop(self, messages: list[ChatCompletionMessageParam]) -> bool: class FixIssue(Step, input_class=FixIssueInputs, output_class=FixIssueOutputs): def __init__(self, inputs): """Initialize the FixIssue step. - + Args: inputs: Dictionary containing input parameters including: - base_path: Optional path to the repository root @@ -145,12 +144,12 @@ def __init__(self, inputs): def run(self): """Execute the FixIssue step. - + This method: 1. Executes the multi-turn LLM conversation to analyze and fix the issue 2. Tracks file modifications made by the CodeEditTool 3. Generates in-memory diffs for all modified files - + Returns: dict: Dictionary containing list of modified files with their diffs """ @@ -162,8 +161,7 @@ def run(self): if not isinstance(tool, CodeEditTool): continue tool_modified_files = [ - dict(path=str(file_path.relative_to(cwd)), diff="") - for file_path in tool.tool_records["modified_files"] + dict(path=str(file_path.relative_to(cwd)), diff="") for file_path in tool.tool_records["modified_files"] ] modified_files.extend(tool_modified_files) @@ -174,7 +172,7 @@ def run(self): file = modified_file["path"] try: # Try to get the diff using git - diff = self.repo.git.diff('HEAD', file) + diff = self.repo.git.diff("HEAD", file) modified_file["diff"] = diff or "" except Exception as e: # Git-specific errors (untracked files, etc) - keep empty diff diff --git a/patchwork/steps/FixIssue/typed.py b/patchwork/steps/FixIssue/typed.py index 2ead5452..cd0265f4 100644 --- a/patchwork/steps/FixIssue/typed.py +++ b/patchwork/steps/FixIssue/typed.py @@ -1,4 +1,4 @@ -from typing_extensions import Annotated, Dict, List, TypedDict +from typing_extensions import Annotated, List, TypedDict from patchwork.common.constants import TOKEN_URL from patchwork.common.utils.step_typing import StepTypeConfig @@ -37,19 +37,21 @@ class FixIssueInputs(__FixIssueRequiredInputs, total=False): class ModifiedFile(TypedDict): """Represents a file that has been modified by the FixIssue step. - + Attributes: path: The relative path to the modified file from the repository root diff: A unified diff string showing the changes made to the file. Generated using Python's difflib to compare the original and modified file contents in memory. - + Note: The diff is generated by comparing file contents before and after modifications, without relying on version control systems. """ + path: str diff: str + class FixIssueOutputs(TypedDict): modified_files: List[ModifiedFile] diff --git a/patchwork/steps/ModifyCode/ModifyCode.py b/patchwork/steps/ModifyCode/ModifyCode.py index 5f517c1e..0252431e 100644 --- a/patchwork/steps/ModifyCode/ModifyCode.py +++ b/patchwork/steps/ModifyCode/ModifyCode.py @@ -9,7 +9,7 @@ def save_file_contents(file_path: str | Path, content: str) -> None: """Utility function to save content to a file. - + Args: file_path: Path to the file to save content to (str or Path) content: Content to write to the file @@ -47,7 +47,7 @@ def replace_code_in_file( new_code: str, ) -> None: """Replace code in a file at the specified line range. - + Args: file_path: Path to the file to modify (str or Path) start_line: Starting line number (1-based) @@ -109,23 +109,25 @@ def run(self) -> dict: try: # Store original content in memory original_content = file_path.read_text() if file_path.exists() else "" - + # Apply the changes replace_code_in_file(file_path, start_line, end_line, new_code) - + # Read modified content current_content = file_path.read_text() if file_path.exists() else "" - + # Generate unified diff fromfile = f"a/{file_path}" tofile = f"b/{file_path}" - diff = "".join(difflib.unified_diff( - original_content.splitlines(keepends=True), - current_content.splitlines(keepends=True), - fromfile=fromfile, - tofile=tofile - )) - + diff = "".join( + difflib.unified_diff( + original_content.splitlines(keepends=True), + current_content.splitlines(keepends=True), + fromfile=fromfile, + tofile=tofile, + ) + ) + if not diff and new_code: # If no diff but we have new code (new file) diff = f"+++ {file_path}\n{new_code}" except (OSError, IOError) as e: @@ -133,14 +135,10 @@ def run(self) -> dict: # Still proceed with the modification even if diff generation fails replace_code_in_file(file_path, start_line, end_line, new_code) diff = f"+++ {file_path}\n{new_code}" # Use new code as diff on error - + # Create the modified code file dictionary modified_code_file = dict( - path=str(file_path), - start_line=start_line, - end_line=end_line, - diff=diff, - **extracted_response + path=str(file_path), start_line=start_line, end_line=end_line, diff=diff, **extracted_response ) modified_code_files.append(modified_code_file) diff --git a/patchwork/steps/ModifyCode/typed.py b/patchwork/steps/ModifyCode/typed.py index 6f26f79b..3fcffd82 100644 --- a/patchwork/steps/ModifyCode/typed.py +++ b/patchwork/steps/ModifyCode/typed.py @@ -12,7 +12,7 @@ class ModifyCodeOutputs(TypedDict): class ModifiedCodeFile(TypedDict, total=False): """Represents a file that has been modified by the ModifyCode step. - + Attributes: path: The path to the modified file start_line: The starting line number of the modification (1-based) @@ -20,12 +20,13 @@ class ModifiedCodeFile(TypedDict, total=False): diff: A unified diff string showing the changes made to the file. Generated using Python's difflib for in-memory comparison of original and modified file contents. - + Note: The diff field is generated using difflib.unified_diff() to compare the original and modified file contents in memory, ensuring efficient and secure diff generation. """ + path: str start_line: int end_line: int diff --git a/poetry.lock b/poetry.lock index ac3ebd3b..afcb0b86 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. [[package]] name = "aiofiles" @@ -1483,19 +1483,22 @@ yaml = ["PyYAML"] [[package]] name = "google-ai-generativelanguage" -version = "0.6.10" +version = "0.6.15" description = "Google Ai Generativelanguage API client library" optional = false python-versions = ">=3.7" files = [ - {file = "google_ai_generativelanguage-0.6.10-py3-none-any.whl", hash = "sha256:854a2bf833d18be05ad5ef13c755567b66a4f4a870f099b62c61fe11bddabcf4"}, - {file = "google_ai_generativelanguage-0.6.10.tar.gz", hash = "sha256:6fa642c964d8728006fe7e8771026fc0b599ae0ebeaf83caf550941e8e693455"}, + {file = "google_ai_generativelanguage-0.6.15-py3-none-any.whl", hash = "sha256:5a03ef86377aa184ffef3662ca28f19eeee158733e45d7947982eb953c6ebb6c"}, + {file = "google_ai_generativelanguage-0.6.15.tar.gz", hash = "sha256:8f6d9dc4c12b065fe2d0289026171acea5183ebf2d0b11cefe12f3821e159ec3"}, ] [package.dependencies] google-api-core = {version = ">=1.34.1,<2.0.dev0 || >=2.11.dev0,<3.0.0dev", extras = ["grpc"]} google-auth = ">=2.14.1,<2.24.0 || >2.24.0,<2.25.0 || >2.25.0,<3.0.0dev" -proto-plus = ">=1.22.3,<2.0.0dev" +proto-plus = [ + {version = ">=1.25.0,<2.0.0dev", markers = "python_version >= \"3.13\""}, + {version = ">=1.22.3,<2.0.0dev", markers = "python_version < \"3.13\""}, +] protobuf = ">=3.20.2,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<6.0.0dev" [[package]] @@ -1535,13 +1538,13 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"] [[package]] name = "google-api-python-client" -version = "2.158.0" +version = "2.159.0" description = "Google API Client Library for Python" optional = false python-versions = ">=3.7" files = [ - {file = "google_api_python_client-2.158.0-py2.py3-none-any.whl", hash = "sha256:36f8c8d2e79e50f76790ca5946d2f3f8333e210dc8539a6c88e0742416474ad2"}, - {file = "google_api_python_client-2.158.0.tar.gz", hash = "sha256:b6664597a9955e04977a62752e33fe44cb35c580e190c1cb08a041893172bd67"}, + {file = 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google-auth = ">=2.15.0" @@ -2671,13 +2674,13 @@ files = [ [[package]] name = "more-itertools" -version = "10.5.0" +version = "10.6.0" description = "More routines for operating on iterables, beyond itertools" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "more-itertools-10.5.0.tar.gz", hash = "sha256:5482bfef7849c25dc3c6dd53a6173ae4795da2a41a80faea6700d9f5846c5da6"}, - {file = "more_itertools-10.5.0-py3-none-any.whl", hash = "sha256:037b0d3203ce90cca8ab1defbbdac29d5f993fc20131f3664dc8d6acfa872aef"}, + {file = "more-itertools-10.6.0.tar.gz", hash = "sha256:2cd7fad1009c31cc9fb6a035108509e6547547a7a738374f10bd49a09eb3ee3b"}, + {file = "more_itertools-10.6.0-py3-none-any.whl", hash = "sha256:6eb054cb4b6db1473f6e15fcc676a08e4732548acd47c708f0e179c2c7c01e89"}, ] [[package]] @@ -3111,46 +3114,50 @@ files = [ [[package]] name = "nvidia-cublas-cu12" -version = "12.1.3.1" +version = "12.4.5.8" description = "CUBLAS native runtime libraries" optional 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python-versions = ">=3" files = [ - {file = "nvidia_cufft_cu12-11.0.2.54-py3-none-manylinux1_x86_64.whl", hash = "sha256:794e3948a1aa71fd817c3775866943936774d1c14e7628c74f6f7417224cdf56"}, - {file = "nvidia_cufft_cu12-11.0.2.54-py3-none-win_amd64.whl", hash = "sha256:d9ac353f78ff89951da4af698f80870b1534ed69993f10a4cf1d96f21357e253"}, + {file = "nvidia_cufft_cu12-11.2.1.3-py3-none-manylinux2014_aarch64.whl", hash = "sha256:5dad8008fc7f92f5ddfa2101430917ce2ffacd86824914c82e28990ad7f00399"}, + {file = "nvidia_cufft_cu12-11.2.1.3-py3-none-manylinux2014_x86_64.whl", hash = "sha256:f083fc24912aa410be21fa16d157fed2055dab1cc4b6934a0e03cba69eb242b9"}, + {file = "nvidia_cufft_cu12-11.2.1.3-py3-none-win_amd64.whl", hash = "sha256:d802f4954291101186078ccbe22fc285a902136f974d369540fd4a5333d1440b"}, ] +[package.dependencies] +nvidia-nvjitlink-cu12 = "*" + [[package]] name = "nvidia-curand-cu12" -version = "10.3.2.106" +version = "10.3.5.147" description = "CURAND native runtime libraries" optional = 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[metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "6c406ed9fa40b8ecda3d7ab91c32a6aaf56aa2ee2ea742f12ad86e443241a923" +content-hash = "5916c662b332b6965befab7f6b97ce7f8f31c09e90333e18b0591be7f9f7add3" diff --git a/pyproject.toml b/pyproject.toml index d7c5ee35..fa687fe0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,35 +52,35 @@ json-repair = "~0.30.0" # pinning transitive dependencies tree-sitter = "~0.21.3" numpy = [ - { version = "^1.26", python = "^3.12", optional = true}, - { version = "^1.24", python = "^3.9, <=3.11", optional = true} + { version = "^1.26", python = "^3.12", optional = true }, + { version = "^1.24", python = "^3.9, <=3.11", optional = true } ] pandas = [ - { version = "^2.1.4", python = "^3.12", optional = true}, - { version = "^2.0.3", python = "3.9, <=3.11", optional = true} + { version = "^2.1.4", python = "^3.12", optional = true }, + { version = "^2.0.3", python = "3.9, <=3.11", optional = true } ] scipy = [ - { version = "^1.7.3", python = "^3.12", optional = true}, - { version = "^1.6.1", python = "3.9, <=3.11", optional = true} + { version = "^1.7.3", python = "^3.12", optional = true }, + { version = "^1.6.1", python = "3.9, <=3.11", optional = true } ] # extras # security -semgrep = {version = "^1.51.0", optional = true} -owasp-depscan = {version = "5.2.15", optional = true } +semgrep = { version = "^1.51.0", optional = true } +owasp-depscan = { version = "5.2.15", optional = true } # rag -chromadb = {version = "~0.4.24", optional = true } -sentence-transformers = {version = "~2.7.0", optional = true } +chromadb = { version = "~0.4.24", optional = true } +sentence-transformers = { version = "~2.7.0", optional = true } # rag - pinning transitive dependencies opentelemetry-exporter-otlp-proto-grpc = { version = "1.25.0", optional = true } onnxruntime = { version = "1.19.2", optional = true } -torch = {version = "~2.4.1", optional = true } -orjson = {version = "~3.9.15", optional = true } +torch = { version = "~2.5.1", optional = true } +orjson = { version = "~3.9.15", optional = true } # notifications -slack-sdk = {version = "~3.28.0", optional = true } +slack-sdk = { version = "~3.28.0", optional = true } [tool.poetry.extras] security = ["semgrep", "owasp-depscan"] @@ -123,9 +123,9 @@ TEST_PATH.default = "tests" [tool.poe.tasks] #mypy = "mypy ${PROJ_PATH}" lint = [ - {cmd = "autoflake --recursive ${PROJ_PATH} ${TEST_PATH}"}, - {cmd = "isort ${PROJ_PATH} ${TEST_PATH}"}, - {cmd = "black ${PROJ_PATH} ${TEST_PATH}"} + { cmd = "autoflake --recursive ${PROJ_PATH} ${TEST_PATH}" }, + { cmd = "isort ${PROJ_PATH} ${TEST_PATH}" }, + { cmd = "black ${PROJ_PATH} ${TEST_PATH}" } ] [tool.black]