Merge branch 'main' into mpio_pointer

pdidev · Nov 28, 2024 · 5f87e2d · 5f87e2d
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,21 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ## [Unreleased]
 
+### Added
+
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Added
 * NetCDF plugin now support the size_of attribute, fixes
   [#446](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/446)
@@ -25,21 +40,16 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   - directly use vendored gtest, benchmark & ZPP
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed deprecated, unmaintained and unsupported plugins and tools for the
   distribution: Decl'SION, FlowVR, FTI and test plugins, as well as the
   PDI Config validator, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-
 ### Fixed
 * Support installation with the latest version of python where setuptools is an external lib, fixes
   [#457](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/457)
 
-### Security
-
 
 ## [1.7.1] - 2024-07-21
 

diff --git a/example/CHANGELOG.md b/example/CHANGELOG.md
@@ -9,6 +9,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ### Added
 
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Changed
 * Replaced the astyle based indentation by a clang-format one, fixes
   [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
@@ -17,17 +30,11 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   CMake 3.16, mpi4py 3.0
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed examples for deprecated, unmaintained and unsupported plugins:
   Decl'SION, FlowVR, FTI and test plugins, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-### Fixed
-
-### Security
-
 
 ## [1.7.0] - 2024-07-17
 

diff --git a/pdi/CHANGELOG.md b/pdi/CHANGELOG.md
@@ -10,11 +10,43 @@ and this project adheres to
 [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 
-
 ## [Unreleased]
 
 ### For users
 
+#### Added
+
+#### Changed
+
+#### Deprecated
+
+#### Removed
+
+#### Fixed
+
+#### Security
+
+
+### For plugin developers
+
+#### Added
+
+#### Changed
+
+#### Deprecated
+
+#### Removed
+
+#### Fixed
+
+#### Security
+
+
+
+## [1.8.0] - 2024-11-28
+
+### For users
+
 #### Added
 * Add the `Context::find()` method.
   [#445](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/445)
@@ -28,16 +60,10 @@ and this project adheres to
   - directly use vendored gtest, benchmark & ZPP
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-#### Deprecated
-
-#### Removed
-
 #### Fixed
 * Fixed compilation with {fmt} version 11+
   [#456](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/456)
 
-#### Security
-
 
 ### For plugin developers
 
@@ -58,12 +84,6 @@ and this project adheres to
 * The `Datatype_template_ptr` type is now deprecated, `Datatype_template_sptr`
   should be used instead.
 
-#### Removed
-
-#### Fixed
-
-#### Security
-
 
 
 ## [1.7.0] - 2024-07-17

diff --git a/pdi/VERSION b/pdi/VERSION
@@ -1 +1 @@
-1.8.0-alpha
+1.9.0-alpha
diff --git a/pdi/docs/Source_installation.md b/pdi/docs/Source_installation.md
@@ -13,11 +13,11 @@ The %PDI source distribution includes:
 
 ## Downloading PDI source distribution {#downloading_distribution}
 
-To download the sources, have a look at the list of all releases at
-https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/releases
+To download the sources, have a look at the list of all releases at 
+https://github.com/pdidev/pdi/releases/
 
-For example, release 1.7.1 can be downloaded from
-https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/archive/1.7.1/pdi-1.7.1.tar.bz2
+For example, release 1.8.0 can be downloaded from
+https://github.com/pdidev/pdi/archive/refs/tags/1.8.0.tar.gz
 
 ## Default installation {#default_installation}
 
@@ -43,15 +43,15 @@ external dependencies are:
 This list of dependencies can be further reduced or extended by changing the
 set of features compiled.
 
-For example, release 1.7.1 can be installed by following these instructions (but
+For example, release 1.8.0 can be installed by following these instructions (but
 look for the latest release at
-https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/releases ):
+https://github.com/pdidev/pdi/releases ):
 
 ```bash
-wget https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/archive/1.7.1/pdi-1.7.1.tar.bz2
-tar -xjf pdi-1.7.1.tar.bz2
-mkdir pdi-1.7.1/build
-cd pdi-1.7.1/build
+wget https://github.com/pdidev/pdi/archive/refs/tags/1.8.0.tar.gz
+tar -xjf 1.8.0.tar.bz2
+mkdir 1.8.0/build
+cd 1.8.0/build
 cmake -DCMAKE_INSTALL_PREFIX="${HOME}/.local/" ..   # configuration
 make install   # compilation and installation
 ```

diff --git a/pdi/docs/Specification_tree_ref.md b/pdi/docs/Specification_tree_ref.md
@@ -1279,7 +1279,7 @@ A \ref tuple_type_node represents a "tuple", where:
 * the value associated to the `buffersize` key represents the overall size of
   the tuple including potential padding, if omitted, the minimum size that fits
   all elements is used,
-* the value associated to the `members` key lists all elements of the tuple,
+* the value associated to the `elements` key lists all elements of the tuple,
 * keys that start with `+` represent attributes, the associated value can be
   anything (**scalar**, **sequence** or **mapping**).
 

diff --git a/plugins/decl_hdf5/CHANGELOG.md b/plugins/decl_hdf5/CHANGELOG.md
@@ -10,6 +10,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 * Possibility to choose parallel MPI-I/O mode: either COLLECTIVE or INDEPENDENT
   [#419](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/419)
 
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Changed
 * Replaced the astyle based indentation by a clang-format one, fixes
   [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
@@ -19,16 +32,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   - directly use vendored gtest & benchmark
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed support for the PDI Config validator, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-### Fixed
-
-### Security
-
 
 ## [1.7.0] - 2024-07-17
 

diff --git a/plugins/decl_netcdf/CHANGELOG.md b/plugins/decl_netcdf/CHANGELOG.md
@@ -8,6 +8,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ### Added
 
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Changed
 * Replaced the astyle based indentation by a clang-format one, fixes
   [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
@@ -17,16 +30,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   - directly use vendored gtest
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed support for the PDI Config validator, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-### Fixed
-
-### Security
-
 
 ## [1.7.0] - 2024-07-17
 

diff --git a/plugins/mpi/CHANGELOG.md b/plugins/mpi/CHANGELOG.md
@@ -8,6 +8,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ### Added
 
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Changed
 * Replaced the astyle based indentation by a clang-format one, fixes
   [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
@@ -16,16 +29,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   CMake 3.16
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed support for the PDI Config validator, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-### Fixed
-
-### Security
-
 
 ## [1.7.0] - 2024-07-17
 

diff --git a/plugins/pycall/CHANGELOG.md b/plugins/pycall/CHANGELOG.md
@@ -9,12 +9,6 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 ### Added
 
 ### Changed
-* Replaced the astyle based indentation by a clang-format one, fixes
-  [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
-* Update the version of dependencies according to our policy: oldest supported
-  Ubuntu & Fedora, oldstable debian & spack 0.18. The new requirements are:
-  CMake 3.16, Python 3.8, numpy 1.17, pybind11 2.4
-  [#465](https://github.com/pdidev/pdi/issues/465)
 
 ### Deprecated
 
@@ -25,6 +19,17 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 ### Security
 
 
+## [1.8.0] - 2024-11-28
+
+### Changed
+* Replaced the astyle based indentation by a clang-format one, fixes
+  [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
+* Update the version of dependencies according to our policy: oldest supported
+  Ubuntu & Fedora, oldstable debian & spack 0.18. The new requirements are:
+  CMake 3.16, Python 3.8, numpy 1.17, pybind11 2.4
+  [#465](https://github.com/pdidev/pdi/issues/465)
+
+
 ## [1.7.0] - 2024-07-17
 
 ### Fixed

diff --git a/plugins/serialize/CHANGELOG.md b/plugins/serialize/CHANGELOG.md
@@ -8,6 +8,19 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ### Added
 
+### Changed
+
+### Deprecated
+
+### Removed
+
+### Fixed
+
+### Security
+
+
+## [1.8.0] - 2024-11-28
+
 ### Changed
 * Replaced the astyle based indentation by a clang-format one, fixes
   [#349](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/349)
@@ -17,16 +30,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
   - directly use vendored gtest
   [#465](https://github.com/pdidev/pdi/issues/465)
 
-### Deprecated
-
 ### Removed
 * Removed support for the PDI Config validator, fixes
   [#458](https://gitlab.maisondelasimulation.fr/pdidev/pdi/-/issues/458)
 
-### Fixed
-
-### Security
-
 
 ## [1.7.0] - 2024-07-17