Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Random undefined reference to `H5T__init_native' errors when building HDF5 #479

Open
jbigot opened this issue Oct 14, 2024 · 0 comments
Open
Labels
bug::compilation A bug where the code does not even compile module: decl'hdf5

Comments

@jbigot
Copy link
Member

jbigot commented Oct 14, 2024

Looks like an upstream dependency issue in HDF5, we randomly get the following error, ex. in https://github.com/pdidev/pdi/actions/runs/11322520578/job/31483370149?pr=478

I guess we should look if an updated HDF5 fixes that

 [ 93%] Linking C executable ../../../bin/h5diff-shared
/usr/bin/ld: ../../../bin/libhdf5_debug.so.200.3.0: undefined reference to `H5T__init_native'
collect2: error: ld returned 1 exit status
make[5]: *** [tools/src/h5diff/CMakeFiles/h5diff-shared.dir/build.make:116: bin/h5diff-shared] Error 1
make[4]: *** [CMakeFiles/Makefile2:724: tools/src/h5diff/CMakeFiles/h5diff-shared.dir/all] Error 2
make[3]: *** [Makefile:156: all] Error 2
make[2]: *** [CMakeFiles/HDF5_pkg.dir/build.make:86: HDF5/src/HDF5_pkg-stamp/HDF5_pkg-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:251: CMakeFiles/HDF5_pkg.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
@jbigot jbigot added bug::compilation A bug where the code does not even compile module: decl'hdf5 labels Oct 14, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug::compilation A bug where the code does not even compile module: decl'hdf5
Projects
None yet
Development

No branches or pull requests

1 participant