TODO.md

Protein Function Prediction

Project Description

TODO.md spec & Kanban Board

Todo

• Implement usage of 5-fold cross validation on base models
• Try to increase number of taxons to 128 and 256
• Benchmark DeepGOPlus
• Benchmark SPROF-GO
• Benchmark DeepGO-SE
• Test different percentiles
• Test collapsing layers into each other, by dividing GO ID height by 2, 3, 4...
• Test protein redundancy by adding proteins with no annotations to base models
• Test GO ID redundancy between classifiers of same layer

In Progress

• Create input file with the interpro families of each protein

Done ✓