v0.6.0

Pipestat v0.6.0 - Major Release

[0.6.0] - 2023-12-22

Added

• select_records, which allows for a single API for selecting attributes (result_identifiers) given filter_conditions and/or columns
• retrieve_one, and retrieve_many which allows for selecting one or multiple records given record_identifier
• pipestat reader submodule to read DB results via FastAPI endpoints: pipestat serve --config "config.yaml"
• ability to create SamplePipestatManager and ProjectSamplePipestatManager which are sample/project specific PipestatManager objects.
• PipestatBoss wrapper class which holds SamplePipestatManager and ProjectSamplePipestatManager classes.
• to_dict methods to parsed schema object.
• select_distinct function which retrieves unique results for a list of attributes.
• pipestat link which creates a directory of symlinks for reported results.
• list_recent_results which allows for retrieving records filtered via a start and end time.
• reporting and retrieving results via item access,e.g. psm["sample1", "name_of_something"] = "name_of_something_string" or result = psm["sample1"]
• pipestat now supports one results file per sample by using {record_identifier} in the results_file_path.

Fixed

• path expansion when creating database url.
• added jinja2 requirement.
• pipeline_name column not populating in postgres db backend.
• pipestat will now create subdirectories during results_file creation.
• fixed bugs and polished both report generation and stats table generation per #131

Changed

• Removed retrieve, get_one_record, get_records function.
• Removed get_orm and replace with get_model.
• Removed get_table_name function.
• Refactor:
  • sample_name -> record_identifier.
  • pipeline_type has been removed from most functions.
• added optional dependencies for the database backend and pipestat reader, e.g. pip install pipestat[dbbackend].

v0.6.0a11

v0.6.0a11

v0.6.0a10

v0.6.0a10

v0.6.0a9

v0.6.0a9

v0.5.2

[0.5.2] - 2023-11-30

Fixed

• add jinja2 to requirements doc.

v0.6.0a8

Updated dependencies: sqlmodel, psycopg

v0.6.0a7

v0.6.0a7

v0.6.0a6

v0.6.0a6

v0.6.0a5

v0.6.0a5

v0.6.0a4

v0.6.0a4