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Documentation: Template R code #17

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rammprasad opened this issue Oct 31, 2023 · 3 comments · Fixed by #30
Closed

Documentation: Template R code #17

rammprasad opened this issue Oct 31, 2023 · 3 comments · Fixed by #30
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@rammprasad
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documentation Improvements or additions to documentation

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@rammprasad
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Please select a category the issue is focused on?

Developer Guides

Let us know where something needs a refresh or put your idea here!

Develop a Vignette to demonstrate how the {sdtm.oak} functions and algorithms can be used to create SDTM domains.
@rammprasad rammprasad added the documentation Improvements or additions to documentation label Oct 31, 2023
@rammprasad rammprasad self-assigned this Oct 31, 2023
@github-project-automation github-project-automation bot moved this to Product Backlog in sdtm.oak R package Oct 31, 2023
@rammprasad rammprasad mentioned this issue Dec 6, 2023
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@rammprasad rammprasad linked a pull request Dec 6, 2023 that will close this issue
sdtm.oak SDTM spec, Algorithms Documentation and template r code for cm domain #30
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edgar-manukyan added a commit that referenced this issue Jan 31, 2024
@edgar-manukyan
#17 fix typo, add info, add cm SDTM example
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edgar-manukyan added a commit that referenced this issue Jan 31, 2024
@rammprasad @galachad @edgar-manukyan
sdtm.oak SDTM spec, Algorithms Documentation and template r code for …
e6e8d7d 
…cm domain (#30)

* All about metadata Vignette

* CM domain pseudocode

* Update Description file

* Algorithms Article

* styler updates

* styler updates

* review comments & pipeline failures

* description file update

* pipeline failures

* address pipeline failure

* lint errors.

* Fix lintr link error

* Updates

* add cm test data

* Styler update

* lint issue

* #17 fix typo, add info, add cm SDTM example

* Automatic renv profile update.

* Automatic renv profile update.

---------

Co-authored-by: Adam Foryś <[email protected]>
Co-authored-by: edgar-manukyan <[email protected]>
Co-authored-by: edgar-manukyan <[email protected]>
@joybvictor
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What library needs to be installed to use the functions read_raw_data_csv, read_sdtm_spec_csv, and read_study_ct_csv. ? I'm quite new to GitHub and not sure if I'm doing it correctly.

@ramiromagno
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ramiromagno commented Feb 2, 2024 •
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Hi @joybvictor ,

Those functions are to be understood as pseudocode. Their implementation is actually not provided as of yet. You can nonetheless read the CSVs with any importer, e.g. read.csv() or readr::read_csv(). I hope that helps.

@joybvictor
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Understood. I've already loaded the library(readxl), but I want to confirm that I'm on the right path.

@ramiromagno ramiromagno moved this from Product Backlog to Done in sdtm.oak R package Apr 2, 2024
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sdtm.oak R package
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sdtm.oak SDTM spec, Algorithms Documentation and template r code for cm domain pharmaverse/sdtm.oak
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@ramiromagno @joybvictor @rammprasad