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Add parser/writer for GAF #14

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cmungall opened this issue Jul 27, 2016 · 0 comments
Open

Add parser/writer for GAF #14

cmungall opened this issue Jul 27, 2016 · 0 comments

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@cmungall
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Many groups use GAFs for phenotypes as well as GO - e.g. planteome (cc @jhpoelen)

Conversely, pxf is generic enough for GO annotations (which are essentially normal, evolved phenotypes for genes)

It would be useful to read/write from GAFs into the phenopacket datamodel.

There are also a family of similar formats which could follow the same pattern. E.g. PAFs:
phenopackets/phenopacket-format#67

And of course the HPOA (non-phenote) TSVs

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