references.bib

% Julia Language

@inproceedings{knopp2014experimental,
  title={Experimental multi-threading support for the Julia programming language},
  author={Knopp, Tobias},
  booktitle={Proceedings of the 1st First Workshop for High Performance Technical Computing in Dynamic Languages},
  pages={1--5},
  year={2014},
  organization={IEEE Press}
}
@article{bezanson2014julia,
  title={Julia: A fresh approach to numerical computing},
  author={Bezanson, Jeff and Edelman, Alan and Karpinski, Stefan and Shah, Viral B},
  journal={arXiv preprint arXiv:1411.1607},
  year={2014}
}
@article{bezanson2012julia,
  title={Julia: A fast dynamic language for technical computing},
  author={Bezanson, Jeff and Karpinski, Stefan and Shah, Viral B and Edelman, Alan},
  journal={arXiv preprint arXiv:1209.5145},
  year={2012}
}
@article{lubin2015computing,
  title={Computing in operations research using Julia},
  author={Lubin, Miles and Dunning, Iain},
  journal={INFORMS Journal on Computing},
  volume={27},
  number={2},
  pages={238--248},
  year={2015},
  publisher={INFORMS}
}
@article{dunning2015jump,
  title={JuMP: A Modeling Language for Mathematical Optimization},
  author={Dunning, Iain and Huchette, Joey and Lubin, Miles},
  journal={arXiv preprint arXiv:1508.01982},
  year={2015}
}

% Machine Learning / Tools

@inproceedings{holmes1994weka,
  title={Weka: A machine learning workbench},
  author={Holmes, Geoffrey and Donkin, Andrew and Witten, Ian H},
  booktitle={Intelligent Information Systems, 1994. Proceedings of the 1994 Second Australian and New Zealand Conference on},
  pages={357--361},
  year={1994},
  organization={IEEE}
}

% GPU Analytical Performance Modelling

@inproceedings{amaris2015simple,
  title={A simple bsp-based model to predict execution time in gpu applications},
  author={Amaris, Marcos and Cordeiro, Daniel and Goldman, Alfredo and de Camargo, Raphael Y},
  booktitle={High Performance Computing (HiPC), 2015 IEEE 22nd International Conference on},
  pages={285--294},
  year={2015},
  organization={IEEE}
}
@article{dao2015performance,
  title={A performance model for gpus with caches},
  author={Dao, Thanh Tuan and Kim, Jungwon and Seo, Sangmin and Egger, Bernhard and Lee, Jaejin},
  journal={IEEE Transactions on Parallel and Distributed Systems},
  volume={26},
  number={7},
  pages={1800--1813},
  year={2015},
  publisher={IEEE}
}
@inproceedings{picchi2015impact,
  title={Impact of L2 cache locking on GPU performance},
  author={Picchi, John and Zhang, Wei},
  booktitle={SoutheastCon 2015},
  pages={1--4},
  year={2015},
  organization={IEEE}
}
@article{sampaio2013divergence,
  title={Divergence analysis},
  author={Sampaio, Diogo and Souza, Rafael Martins de and Collange, Sylvain and Pereira, Fernando Magno Quint{\~a}o},
  journal={ACM Transactions on Programming Languages and Systems (TOPLAS)},
  volume={35},
  number={4},
  pages={13},
  year={2013},
  publisher={ACM}
}
@inproceedings{baghsorkhi2010adaptive,
  title={An adaptive performance modeling tool for GPU architectures},
  author={Baghsorkhi, Sara S and Delahaye, Matthieu and Patel, Sanjay J and Gropp, William D and Hwu, Wen-mei W},
  booktitle={ACM Sigplan Notices},
  volume={45},
  number={5},
  pages={105--114},
  year={2010},
  organization={ACM}
}
@inproceedings{zhang2011quantitative,
  title={A quantitative performance analysis model for GPU architectures},
  author={Zhang, Yao and Owens, John D},
  booktitle={High Performance Computer Architecture (HPCA), 2011 IEEE 17th International Symposium on},
  pages={382--393},
  year={2011},
  doi = "10.1109/HPCA.2011.5749745",
  issn = "1530-0897",
  organization={IEEE}
}

% Autotuning in GPUs

@article{alves2004bsp,
  title={BSP/CGM algorithms for maximum subsequence and maximum subarray},
  author={Alves, Carlos ER and C{\'a}ceres, Edson N and Song, Siang W},
  journal={PVM/MPI},
  volume={3241},
  pages={139--146},
  year={2004},
  publisher={Springer}
}
@inproceedings{ferreira2014parallel,
  title={A parallel maximum subarray algorithm on gpus},
  author={Ferreira, Cleber S and Camargo, Raphael Y and Song, Siang Wun},
  booktitle={Computer Architecture and High Performance Computing Workshop (SBAC-PADW), 2014 International Symposium on},
  pages={12--17},
  year={2014},
  organization={IEEE}
}
@inproceedings{grauer2012auto,
  title={Auto-tuning a high-level language targeted to GPU codes},
  author={Grauer-Gray, Scott and Xu, Lifan and Searles, Robert and Ayalasomayajula, Sudhee and Cavazos, John},
  booktitle={Innovative Parallel Computing (InPar), 2012},
  pages={1--10},
  year={2012},
  organization={IEEE}
}
@incollection{li2009note,
  title={A note on auto-tuning GEMM for GPUs},
  author={Li, Yinan and Dongarra, Jack and Tomov, Stanimire},
  booktitle={Computational Science--ICCS 2009},
  pages={884--892},
  year={2009},
  publisher={Springer}
}
@inproceedings{guo2010auto,
  title={Auto-tuning CUDA parameters for sparse matrix-vector multiplication on gpus},
  author={Guo, Ping and Wang, Liqiang},
  booktitle={Computational and Information Sciences (ICCIS), 2010 International Conference on},
  pages={1154--1157},
  year={2010},
  organization={IEEE}
}
@inproceedings{chaparala2015autotuning,
  title={Autotuning GPU-accelerated QAP Solvers for Power and Performance},
  author={Chaparala, Abhilash and Novoa, Clara and Qasem, Apan},
  booktitle={High Performance Computing and Communications (HPCC), 2015 IEEE 7th International Symposium on Cyberspace Safety and Security (CSS), 2015 IEEE 12th International Conferen on Embedded Software and Systems (ICESS), 2015 IEEE 17th International Conference on},
  pages={78--83},
  year={2015},
  organization={IEEE}
}
@inproceedings{sedaghati2015automatic,
  title={Automatic selection of sparse matrix representation on GPUs},
  author={Sedaghati, Naser and Mu, Te and Pouchet, Louis-No{\"e}l and Parthasarathy, Srinivasan and Sadayappan, P},
  booktitle={Proceedings of the 29th ACM on International Conference on Supercomputing},
  pages={99--108},
  year={2015},
  organization={ACM}
}
@article{jia2015gpu,
  title={GPU Performance and Power Tuning Using Regression Trees},
  author={Jia, Wenhao and Garza, Elba and Shaw, Kelly A and Martonosi, Margaret},
  journal={ACM Transactions on Architecture and Code Optimization (TACO)},
  volume={12},
  number={2},
  pages={13},
  year={2015},
  publisher={ACM}
}
@inproceedings{falch2015machine,
  title={Machine Learning Based Auto-tuning for Enhanced OpenCL Performance Portability},
  author={Falch, Thomas L and Elster, Anne C},
  booktitle={Parallel and Distributed Processing Symposium Workshop (IPDPSW), 2015 IEEE International},
  pages={1231--1240},
  year={2015},
  organization={IEEE}
}
@inproceedings{belviranli2015peerwave,
  title={PeerWave: Exploiting Wavefront Parallelism on GPUs with Peer-SM Synchronization},
  author={Belviranli, Mehmet E and Deng, Peng and Bhuyan, Laxmi N and Gupta, Rajiv and Zhu, Qi},
  booktitle={Proceedings of the 29th ACM on International Conference on Supercomputing},
  pages={25--35},
  year={2015},
  organization={ACM}
}
@inproceedings{wahib2015automated,
  title={Automated GPU Kernel Transformations in Large-Scale Production Stencil Applications},
  author={Wahib, Mohamed and Maruyama, Naoya},
  booktitle={Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing},
  pages={259--270},
  year={2015},
  organization={ACM}
}

% Parallel Computing

@inproceedings{virouleau2014evaluation,
  title={Evaluation of OpenMP dependent tasks with the KASTORS benchmark suite},
  author={Virouleau, Philippe and Brunet, Pierrick and Broquedis, Fran{\c{c}}ois and Furmento, Nathalie and Thibault, Samuel and Aumage, Olivier and Gautier, Thierry},
  booktitle={International Workshop on OpenMP},
  pages={16--29},
  year={2014},
  organization={Springer}
}
@inproceedings{schardl2017tapir,
  title={Tapir: Embedding Fork-Join Parallelism into LLVM's Intermediate Representation},
  author={Schardl, Tao B and Moses, William S and Leiserson, Charles E},
  booktitle={Proceedings of the 22nd ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming},
  pages={249--265},
  year={2017},
  organization={ACM}
}
@article{asanovic2009view,
  title={A view of the parallel computing landscape},
  author={Asanovic, Krste and Bodik, Rastislav and Demmel, James and Keaveny, Tony and Keutzer, Kurt and Kubiatowicz, John and Morgan, Nelson and Patterson, David and Sen, Koushik and Wawrzynek, John and others},
  journal={Communications of the ACM},
  volume={52},
  number={10},
  pages={56--67},
  year={2009},
  publisher={ACM}
}
@techreport{asanovic2006landscape,
  title={The landscape of parallel computing research: A view from berkeley},
  author={Asanovic, Krste and Bodik, Ras and Catanzaro, Bryan Christopher and Gebis, Joseph James and Husbands, Parry and Keutzer, Kurt and Patterson, David A and Plishker, William Lester and Shalf, John and Williams, Samuel Webb and others},
  year={2006},
  institution={Technical Report UCB/EECS-2006-183, EECS Department, University of California, Berkeley}
}
@inproceedings{che2009rodinia,
  title={Rodinia: A benchmark suite for heterogeneous computing},
  author={Che, Shuai and Boyer, Michael and Meng, Jiayuan and Tarjan, David and Sheaffer, Jeremy W and Lee, Sang-Ha and Skadron, Kevin},
  booktitle={Workload Characterization, 2009. IISWC 2009. IEEE International Symposium on},
  pages={44--54},
  year={2009},
  organization={IEEE}
}
@article{dastgeer2015smart,
  title={Smart containers and skeleton programming for GPU-based systems},
  author={Dastgeer, Usman and Kessler, Christoph},
  journal={International Journal of Parallel Programming},
  pages={1--25},
  year={2015},
  publisher={Springer}
}
@article{markov2014limits,
  title={Limits on fundamental limits to computation},
  author={Markov, Igor L},
  journal={Nature},
  volume={512},
  number={7513},
  pages={147--154},
  year={2014},
  publisher={Nature Publishing Group}
}

% Bandit Techniques

@inproceedings{cohen2017learning,
  title={Learning with bandit feedback in potential games},
  author={Cohen, Johanne and H{\'e}liou, Am{\'e}lie and Mertikopoulos, Panayotis},
  booktitle={Proceedings of the 31th International Conference on Neural Information Processing Systems},
  year={2017}
}

% Autotuning (Umbrella)
% TODO: Create meaningful groups of papers.

@inproceedings{balaprakash2011can,
  title={Can search algorithms save large-scale automatic performance tuning?},
  author={Balaprakash, Prasanna and Wild, Stefan M and Hovland, Paul D},
  booktitle={ICCS},
  pages={2136--2145},
  year={2011}
}
@inproceedings{balaprakash2012experimental,
  title={An experimental study of global and local search algorithms in empirical performance tuning},
  author={Balaprakash, Prasanna and Wild, Stefan M and Hovland, Paul D},
  booktitle={International Conference on High Performance Computing for Computational Science},
  pages={261--269},
  year={2012},
  organization={Springer}
}
@inproceedings{yi2007poet,
  title={{POET}: Parameterized optimizations for empirical tuning},
  author={Yi, Qing and Seymour, Keith and You, Haihang and Vuduc, Richard and Quinlan, Dan},
  booktitle={Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International},
  pages={1--8},
  year={2007},
  organization={IEEE}
}
@inproceedings{hartono2009annotation,
  title={Annotation-based empirical performance tuning using {Orio}},
  author={Hartono, Albert and Norris, Boyana and Sadayappan, Ponnuswamy},
  booktitle={Parallel \& Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on},
  pages={1--11},
  year={2009},
  organization={IEEE}
}
@inproceedings{zhang2018auto,
  title={Auto-tuning streamed applications on Intel Xeon Phi},
  author={Zhang, Peng and Fang, Jianbin and Tang, Tao and Yang, Canqun and Wang, Zheng},
  booktitle={2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
  year={2018},
  organization={IEEE}
}
@inproceedings{zeng2018online,
  title={Online Tuning of Parallelism Degree in Parallel Nesting Transactional Memory},
  author={Zeng, Jingna and Romano, Paolo and Barreto, Joao and Rodrigues, Lu{\i}s and Haridi, Seif},
  booktitle={2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
  year={2018},
  organization={IEEE}
}
@inproceedings{xu2018taming,
  title={Taming the" Monster": Overcoming Program Optimization Challenges on SW26010 Through Precise Performance Modeling},
  author={Xu, Shizhen and Xu, Yuanchao and Xue, Wei and Shen, Xipeng and Zheng, Fang and Huang, Xiaomeng and Yang, Guangwen},
  booktitle={2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS)},
  pages={763--773},
  year={2018},
  organization={IEEE}
}
@article{ashouri2016cobayn,
  title={Cobayn: Compiler autotuning framework using bayesian networks},
  author={Ashouri, Amir Hossein and Mariani, Giovanni and Palermo, Gianluca and Park, Eunjung and Cavazos, John and Silvano, Cristina},
  journal={ACM Transactions on Architecture and Code Optimization (TACO)},
  volume={13},
  number={2},
  pages={21},
  year={2016},
  publisher={ACM}
}
@inproceedings{balaprakash2013active,
  title={Active-learning-based surrogate models for empirical performance tuning},
  author={Balaprakash, Prasanna and Gramacy, Robert B and Wild, Stefan M},
  booktitle={Cluster Computing (CLUSTER), 2013 IEEE International Conference on},
  pages={1--8},
  year={2013},
  organization={IEEE}
}
@book{suda2010software,
   title =     {Software Automatic Tuning: From Concepts to State-of-the-Art Results},
   author =    {Reiji Suda, Ken Naono, Keita Teranishi, John Cavazos (auth.), Ken Naono, Keita Teranishi, John Cavazos, Reiji Suda (eds.)},
   publisher = {Springer-Verlag New York},
   isbn =      {1441969349,9781441969347},
   year =      {2010},
   edition =   {1}
}
@inproceedings{nelson2015generating,
  title={Generating efficient tensor contractions for gpus},
  author={Nelson, Thomas and Rivera, Axel and Balaprakash, Prasanna and Hall, Mary and Hovland, Paul D and Jessup, Elizabeth and Norris, Boyana},
  booktitle={2015 44th International Conference on Parallel Processing (ICPP)},
  pages={969--978},
  year={2015},
  organization={IEEE}
}
@inproceedings{seymour2008comparison,
  title={A comparison of search heuristics for empirical code optimization.},
  author={Seymour, Keith and You, Haihang and Dongarra, Jack},
  booktitle={CLUSTER},
  pages={421--429},
  year={2008}
}
@article{knijnenburg2003combined,
  title={Combined selection of tile sizes and unroll factors using iterative compilation},
  author={Knijnenburg, Peter MW and Kisuki, Toru and O'Boyle, Michael FP},
  journal={The Journal of Supercomputing},
  volume={24},
  number={1},
  pages={43--67},
  year={2003},
  publisher={Springer}
}
@article{balaprakash2018autotuning,
  title={Autotuning in High-Performance Computing Applications},
  author={Balaprakash, Prasanna and Dongarra, Jack and Gamblin, Todd and Hall, Mary and Hollingsworth, Jeffrey K and Norris, Boyana and Vuduc, Richard},
  journal={Proceedings of the IEEE},
  number={99},
  pages={1--16},
  year={2018},
  publisher={IEEE}
}
@article{vu2017surrogate,
  title={Surrogate-based methods for black-box optimization},
  author={Vu, Ky Khac and D'Ambrosio, Claudia and Hamadi, Youssef and Liberti, Leo},
  journal={International Transactions in Operational Research},
  volume={24},
  number={3},
  pages={393--424},
  year={2017},
  publisher={Wiley Online Library}
}
@article{castro2013adaptive,
  title={Adaptive sampling for performance characterization of application kernels},
  author={Castro, Pablo and Petit, Eric and Farjallah, Asma and Jalby, William},
  journal={Concurrency and Computation: Practice and Experience},
  volume={25},
  number={17},
  pages={2345--2362},
  year={2013},
  publisher={Wiley Online Library}
}
@article{videau2017boast,
  title={{BOAST}: A metaprogramming framework to produce portable and efficient computing kernels for HPC applications},
  author={Videau, Brice and Pouget, Kevin and Genovese, Luigi and Deutsch, Thierry and Komatitsch, Dimitri and Desprez, Fr{\'e}d{\'e}ric and M{\'e}haut, Jean-Fran{\c{c}}ois},
  journal={The International Journal of High Performance Computing Applications},
  pages={1094342017718068},
  year={2017},
  publisher={SAGE Publications Sage UK: London, England}
}
@mastersthesis{masnada2016semi,
  TITLE = {{Semi-Automatic Performance Optimization of HPC Kernels}},
  AUTHOR = {Masnada, Steven Quinito},
  URL = {https://hal.inria.fr/hal-01579422},
  SCHOOL = {{Universit{\'e} Grenoble Alpes}},
  YEAR = {2016},
  MONTH = Jun,
  KEYWORDS = {Perfomance tuning ; Auto-tuning ; Linear regression ; Design of experiments},
  HAL_ID = {hal-01579422},
  HAL_VERSION = {v1},
}
@inproceedings{cronsioe2013boast,
  title={{BOAST}: Bringing optimization through automatic source-to-source transformations},
  author={Cronsioe, Johan and Videau, Brice and Marangozova-Martin, Vania},
  booktitle={Embedded Multicore Socs (MCSoC), 2013 IEEE 7th International Symposium on},
  pages={129--134},
  year={2013},
  organization={IEEE}
}
@article{audet2014optimization,
  title={Optimization of algorithms with OPAL},
  author={Audet, Charles and Dang, Kien-Cong and Orban, Dominique},
  journal={Mathematical Programming Computation},
  volume={6},
  number={3},
  pages={233--254},
  year={2014},
  publisher={Springer}
}
@article{fursin2011milepost,
  title={Milepost gcc: Machine learning enabled self-tuning compiler},
  author={Fursin, Grigori and Kashnikov, Yuriy and Memon, Abdul Wahid and Chamski, Zbigniew and Temam, Olivier and Namolaru, Mircea and Yom-Tov, Elad and Mendelson, Bilha and Zaks, Ayal and Courtois, Eric and others},
  journal={International journal of parallel programming},
  volume={39},
  number={3},
  pages={296--327},
  year={2011},
  publisher={Springer}
}
@inproceedings{sukhoroslov2016program,
  title={Program autotuning as a service: opportunities and challenges},
  author={Sukhoroslov, Oleg and Volkov, Sergey and Afanasiev, Alexander},
  booktitle={Utility and Cloud Computing (UCC), 2016 IEEE/ACM 9th International Conference on},
  pages={148--155},
  year={2016},
  organization={IEEE}
}
@inproceedings{garvey2015automatic,
  title={Automatic performance tuning of stencil computations on GPUs},
  author={Garvey, Joseph D and Abdelrahman, Tarek S},
  booktitle={Parallel Processing (ICPP), 2015 44th International Conference on},
  pages={300--309},
  year={2015},
  organization={IEEE}
}
@inproceedings{nugteren2015cltune,
  title={{CLTune}: A generic auto-tuner for {OpenCL} kernels},
  author={Nugteren, Cedric and Codreanu, Valeriu},
  booktitle={Embedded Multicore/Many-core Systems-on-Chip (MCSoC), 2015 IEEE 9th International Symposium on},
  pages={195--202},
  year={2015},
  organization={IEEE}
}
@inproceedings{krommydas2015glaf,
  title={GLAF: A Visual Programming and Auto-tuning Framework for Parallel Computing},
  author={Krommydas, Konstantinos and Sasanka, Ruchira and Feng, Wu-chun},
  booktitle={Parallel Processing (ICPP), 2015 44th International Conference on},
  pages={859--868},
  year={2015},
  organization={IEEE}
}
@inproceedings{ding2015autotuning,
  title={Autotuning algorithmic choice for input sensitivity},
  author={Ding, Yufei and Ansel, Jason and Veeramachaneni, Kalyan and Shen, Xipeng and O’Reilly, Una-May and Amarasinghe, Saman},
  booktitle={Proceedings of the 36th ACM SIGPLAN Conference on Programming Language Design and Implementation},
  pages={379--390},
  year={2015},
  organization={ACM}
}
@inproceedings{mametjanov2015autotuning,
  title={Autotuning FPGA design parameters for performance and power},
  author={Mametjanov, Azamat and Balaprakash, Prasanna and Choudary, Chekuri and Hovland, Paul D and Wild, Stefan M and Sabin, Gerald},
  booktitle={Field-Programmable Custom Computing Machines (FCCM), 2015 IEEE 23rd Annual International Symposium on},
  pages={84--91},
  year={2015},
  organization={IEEE}
}
@inproceedings{guerreiro2015multi,
  title={Multi-kernel auto-tuning on gpus: Performance and energy-aware optimization},
  author={Guerreiro, Jo{\~a}o and Ilic, Aleksandar and Roma, Nuno and Tom{\'a}s, Pedro},
  booktitle={Parallel, Distributed and Network-Based Processing (PDP), 2015 23rd Euromicro International Conference on},
  pages={438--445},
  year={2015},
  organization={IEEE}
}
@inproceedings{luo2015fast,
  title={FAST: A fast stencil autotuning framework based on an optimal-solution space model},
  author={Luo, Yulong and Tan, Guangming and Mo, Zeyao and Sun, Ninghui},
  booktitle={Proceedings of the 29th ACM on International Conference on Supercomputing},
  pages={187--196},
  year={2015},
  organization={ACM}
}
@inproceedings{jayasena2015auto,
  title={Auto-tuning the java virtual machine},
  author={Jayasena, Sanath and Fernando, Milinda and Rusira, Tharindu and Perera, Chalitha and Philips, Chamara},
  booktitle={Parallel and Distributed Processing Symposium Workshop (IPDPSW), 2015 IEEE International},
  pages={1261--1270},
  year={2015},
  organization={IEEE}
}
@inproceedings{midorikawa2016blk,
  title={Blk-Tune: Blocking Parameter Auto-Tuning to Minimize Input-Output Traffic for Flash-Based Out-of-Core Stencil Computations},
  author={Midorikawa, Hiroko},
  booktitle={Parallel and Distributed Processing Symposium Workshops, 2016 IEEE International},
  pages={1516--1526},
  year={2016},
  organization={IEEE}
}
@inproceedings{xu2016analytical,
  title={An analytical model-based auto-tuning framework for locality-aware loop scheduling},
  author={Xu, Rengan and Chandrasekaran, Sunita and Tian, Xiaonan and Chapman, Barbara},
  booktitle={International Conference on High Performance Computing},
  pages={3--20},
  year={2016},
  organization={Springer}
}
@inproceedings{tapus2002active,
  title={Active harmony: Towards automated performance tuning},
  author={{\c{T}}{\u{a}}pu{\c{s}}, Cristian and Chung, I-Hsin and Hollingsworth, Jeffrey K and others},
  booktitle={Proceedings of the 2002 ACM/IEEE conference on Supercomputing},
  pages={1--11},
  year={2002},
  organization={IEEE Computer Society Press}
}
@article{coelho2016mase,
  title={MASE-BDI: agent-based simulator for environmental land change with efficient and parallel auto-tuning},
  author={Coelho, C{\'a}ssio GC and Abreu, Carolina G and Ramos, Rafael M and Mendes, Aldo HD and Teodoro, George and Ralha, C{\'e}lia G},
  journal={Applied Intelligence},
  volume={45},
  number={3},
  pages={904--922},
  year={2016},
  publisher={Springer}
}
@inproceedings{silvano2016antarex,
  title={The ANTAREX approach to autotuning and adaptivity for energy efficient HPC systems},
  author={Silvano, Cristina and Agosta, Giovanni and Cherubin, Stefano and Gadioli, Davide and Palermo, Gianluca and Bartolini, Andrea and Benini, Luca and Martinovi{\v{c}}, Jan and Palkovi{\v{c}}, Martin and Slaninov{\'a}, Kate{\v{r}}ina and others},
  booktitle={Proceedings of the ACM International Conference on Computing Frontiers},
  pages={288--293},
  year={2016},
  organization={ACM}
}
@article{abdelfattah2016high,
  title={High-performance tensor contractions for GPUs},
  author={Abdelfattah, Ahmad and Baboulin, Marc and Dobrev, Veselin and Dongarra, Jack and Earl, Christopher and Falcou, Joel and Haidar, Azzam and Karlin, Ian and Kolev, Tz and Masliah, Ian and others},
  journal={Procedia Computer Science},
  volume={80},
  pages={108--118},
  year={2016},
  publisher={Elsevier}
}
@inproceedings{abdelfattah2016performance,
  title={Performance, design, and autotuning of batched GEMM for GPUs},
  author={Abdelfattah, Ahmad and Haidar, Azzam and Tomov, Stanimire and Dongarra, Jack},
  booktitle={International Conference on High Performance Computing},
  pages={21--38},
  year={2016},
  organization={Springer}
}
@inproceedings{gerndt2005periscope,
  title={Periscope: Advanced Techniques for Performance Analysis.},
  author={Gerndt, Michael and F{\"u}rlinger, Karl and Kereku, Edmond},
  booktitle={PARCO},
  pages={15--26},
  year={2005}
}
@article{falch2017machine,
  title={Machine learning-based auto-tuning for enhanced performance portability of {OpenCL} applications},
  author={Falch, Thomas L and Elster, Anne C},
  journal={Concurrency and Computation: Practice and Experience},
  volume={29},
  number={8},
  year={2017},
  publisher={Wiley Online Library}
}
@article{schuchart2017readex,
  title={The READEX formalism for automatic tuning for energy efficiency},
  author={Schuchart, Joseph and Gerndt, Michael and Kjeldsberg, Per Gunnar and Lysaght, Michael and Hor{\'a}k, David and {\v{R}}{\'\i}ha, Lubom{\'\i}r and Gocht, Andreas and Sourouri, Mohammed and Kumaraswamy, Madhura and Chowdhury, Anamika and others},
  journal={Computing},
  pages={1--19},
  year={2017},
  publisher={Springer}
}
@inproceedings{beckingsale2017apollo,
  title={Apollo: Reusable Models for Fast, Dynamic Tuning of Input-Dependent Code},
  author={Beckingsale, David and Pearce, Olga and Laguna, Ignacio and Gamblin, Todd},
  booktitle={Parallel \& Distributed Processing, 2017. IPDPS 2017. IEEE International Symposium on},
  pages={307--316},
  organization={IEEE},
  year={2017}
}
@article{lang2017data,
  title={Data-aware tuning of scientific applications with model-based autotuning},
  author={Lang, Jens},
  journal={Concurrency and Computation: Practice and Experience},
  volume={29},
  number={4},
  year={2017},
  publisher={Wiley Online Library}
}
@article{sourouri2017panda,
  title={Panda: A Compiler Framework for Concurrent CPU+GPU Execution of 3D Stencil Computations on GPU-accelerated Supercomputers},
  author={Sourouri, Mohammed and Baden, Scott B and Cai, Xing},
  journal={International Journal of Parallel Programming},
  volume={45},
  number={3},
  pages={711--729},
  year={2017},
  publisher={Springer}
}
@inproceedings{takizawa2014xevolver,
  title={Xevolver: An XML-based code translation framework for supporting HPC application migration},
  author={Takizawa, Hiroyuki and Hirasawa, Shoichi and Hayashi, Yasuharu and Egawa, Ryusuke and Kobayashi, Hiroaki},
  booktitle={High Performance Computing (HiPC), 2014 21st International Conference on},
  pages={1--11},
  year={2014},
  organization={IEEE}
}
@inproceedings{takizawa2017customizable,
  title={A Customizable Auto-Tuning Scenario with User-Defined Code Transformations},
  author={Takizawa, Hiroyuki and Sato, Daichi and Hirasawa, Shoichi and Takahashi, Daisuke},
  booktitle={Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2017 IEEE International},
  pages={1372--1378},
  year={2017},
  organization={IEEE}
}
@inproceedings{hou2017auto,
  title={Auto-Tuning Strategies for Parallelizing Sparse Matrix-Vector (SpMV) Multiplication on Multi-and Many-Core Processors},
  author={Hou, Kaixi and Feng, Wu-chun and Che, Shuai},
  booktitle={Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2017 IEEE International},
  pages={713--722},
  year={2017},
  organization={IEEE}
}
@article{chang2015tangram,
  title={Tangram: a high-level language for performance portable code synthesis},
  author={Chang, Li-Wen and Dakkak, Abdul and Rodrigues, Christopher I and Hwu, Wen-mei},
  journal={In Programmability Issues for Heterogeneous Multicores},
  year={2015}
}
@phdthesis{dimarco2017distributed,
  title={A distributed framework supporting runtime autotuning for HPC applications},
  author={Di Marco, Cristiano},
  year={2017},
  school={Politecnico Milano}
}
@article{gerndt2017multi,
  title={A multi-aspect online tuning framework for HPC applications},
  author={Gerndt, Michael and Benkner, Siegfried and C{\'e}sar, Eduardo and Navarrete, Carmen and Bajrovic, Enes and Dokulil, Jiri and Guill{\'e}n, Carla and Mijakovic, Robert and Sikora, Anna},
  journal={Software Quality Journal},
  pages={1--34},
  year={2017},
  publisher={Springer}
}
@inproceedings{chang2016efficient,
  title={Efficient kernel synthesis for performance portable programming},
  author={Chang, Li-Wen and El Hajj, Izzat and Rodrigues, Christopher and G{\'o}mez-Luna, Juan and Hwu, Wen-mei},
  booktitle={Microarchitecture (MICRO), 2016 49th Annual IEEE/ACM International Symposium on},
  year={2016},
  organization={IEEE}
}
@inproceedings{xu2017parallel,
  title={A Parallel Bandit-Based Approach for Autotuning FPGA Compilation},
  author={Xu, Chang and Liu, Gai and Zhao, Ritchie and Yang, Stephen and Luo, Guojie and Zhang, Zhiru},
  booktitle={Proceedings of the 2017 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays},
  pages={157--166},
  year={2017},
  organization={ACM}
}
@inproceedings{poli2009there,
  title={There is a free lunch for hyper-heuristics, genetic programming and computer scientists},
  author={Poli, Riccardo and Graff, Mario},
  booktitle={European Conference on Genetic Programming},
  pages={195--207},
  year={2009},
  organization={Springer}
}
@inproceedings{dalibard2017boat,
  title={BOAT: Building Auto-Tuners with Structured Bayesian Optimization},
  author={Dalibard, Valentin and Schaarschmidt, Michael and Yoneki, Eiko},
  booktitle={26th International World Wide Web Conference, Systems and Infrastructure Track},
  year={2017}
}
@inproceedings{balaprakash2016automomml,
  author = {P. Balaprakash and A. Tiwari and S. M. Wild and P. D. Hovland},
  booktitle = {High Performance Computing: 31st International Conference, ISC High Performance 2016, Frankfurt, Germany, June 19-23, 2016, Proceedings},
  doi = {10.1007/978-3-319-41321-1_12},
  editor = {Kunkel, M. Julian and Balaji, Pavan and Dongarra, Jack},
  isbn = {978-3-319-41321-1},
  pages = {219--239},
  publisher = {Springer International Publishing},
  title = {{AutoMOMML: Automatic Multi-objective Modeling with Machine Learning}},
  year = {2016},
}
@inproceedings{xu2014msl,
  title={MSL: A synthesis enabled language for distributed implementations},
  author={Xu, Zhilei and Kamil, Shoaib and Solar-Lezama, Armando},
  booktitle={Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis},
  pages={311--322},
  year={2014},
  organization={IEEE Press}
}
@inproceedings{katagiri2016auto,
  title={Auto-Tuning of Hybrid MPI/OpenMP Execution with Code Selection by ppOpen-AT},
  author={Katagiri, Takahiro and Matsumoto, Masaharu and Ohshima, Satoshi},
  booktitle={2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)},
  pages={1488--1495},
  year={2016},
  organization={IEEE}
}
@article{banerjee2016genetic,
  title={A genetic algorithm based approach for multi-objective hardware/software co-optimization},
  author={Banerjee, Tania and Gadou, Mohamed and Ranka, Sanjay},
  journal={Sustainable Computing: Informatics and Systems},
  volume={10},
  pages={36--47},
  year={2016},
  publisher={Elsevier}
}
@inproceedings{ngoko2016automatic,
  title={An automatic tuning system for solving NP-hard problems in clouds},
  author={Ngoko, Yanik and Trystram, Denis and Reis, Valentin and C{\'e}rin, Christophe},
  booktitle={2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)},
  pages={1443--1452},
  year={2016},
  organization={IEEE}
}
@inproceedings{ziegler2016scalable,
  title={Scalable Auto-Tuning of Synthesis Parameters for Optimizing High-Performance Processors},
  author={Ziegler, Matthew M and Liu, Hung-Yi and Carloni, Luca P},
  booktitle={Proceedings of the 2016 International Symposium on Low Power Electronics and Design},
  pages={180--185},
  year={2016},
  organization={ACM}
}
@inproceedings{ziegler2016synthesis,
  title={A synthesis-parameter tuning system for autonomous design-space exploration},
  author={Ziegler, Matthew M and Liu, Hung-Yi and Gristede, George and Owens, Bruce and Nigaglioni, Ricardo and Carloni, Luca P},
  booktitle={2016 Design, Automation \& Test in Europe Conference \& Exhibition (DATE)},
  pages={1148--1151},
  year={2016},
  organization={IEEE}
}
@incollection{bader2007annotations,
  title={Annotations for productivity and performance portability},
  author={Bader, David A and Hartono, Albert and Gropp, William D and Norris, Boyana},
  booktitle={Petascale Computing: Algorithms and Applications},
  pages={443--462},
  year={2007},
  publisher={Chapman and Hall/CRC}
}
@inproceedings{ogilvie2017minimizing,
  title={Minimizing the cost of iterative compilation with active learning},
  author={Ogilvie, William F and Petoumenos, Pavlos and Wang, Zheng and Leather, Hugh},
  booktitle={Proceedings of the 2017 International Symposium on Code Generation and Optimization},
  pages={245--256},
  year={2017},
  organization={IEEE Press}
}
@article{balaprakash2012spapt,
  title={{SPAPT}: Search problems in automatic performance tuning},
  author={Balaprakash, Prasanna and Wild, Stefan M and Norris, Boyana},
  journal={Procedia Computer Science},
  volume={9},
  pages={1959--1968},
  year={2012},
  publisher={Elsevier}
}
@article{gerndt2010automatic,
  title={Automatic performance analysis with {Periscope}},
  author={Gerndt, Michael and Ott, Michael},
  journal={Concurrency and Computation: Practice and Experience},
  volume={22},
  number={6},
  pages={736--748},
  year={2010},
  publisher={Wiley Online Library}
}
@inproceedings{mendis2015helium,
  title={Helium: lifting high-performance stencil kernels from stripped x86 binaries to halide DSL code},
  author={Mendis, Charith and Bosboom, Jeffrey and Wu, Kevin and Kamil, Shoaib and Ragan-Kelley, Jonathan and Paris, Sylvain and Zhao, Qin and Amarasinghe, Saman},
  booktitle={Proceedings of the 36th ACM SIGPLAN Conference on Programming Language Design and Implementation},
  pages={391--402},
  year={2015},
  organization={ACM}
}
@phdthesis{wu2015deeptuner,
  title={DeepTuner: A System for Search Technique Recommendation in Program Autotuning},
  author={Wu, Kevin},
  year={2015},
  school={Massachusetts Institute of Technology}
}
@article{boratto2014automatic,
  title={Automatic routine tuning to represent landform attributes on multicore and multi-GPU systems},
  author={Boratto, Murilo and Alonso, Pedro and Gimen{\'e}z, Domingo and Barreto, Marcos},
  journal={The Journal of Supercomputing},
  volume={70},
  number={2},
  pages={733--745},
  year={2014},
  publisher={Springer}
}
@article{fursin2015collective,
  title={Collective Mind, Part II: Towards Performance-and Cost-Aware Software Engineering as a Natural Science},
  author={Fursin, Grigori and Memon, Abdul and Guillon, Christophe and Lokhmotov, Anton},
  journal={arXiv preprint arXiv:1506.06256},
  year={2015}
}
@inproceedings{jordan2012multi,
  title={A multi-objective auto-tuning framework for parallel codes},
  author={Jordan, Herbert and Thoman, Peter and Durillo, Juan J and Pellegrini, Sara and Gschwandtner, Philipp and Fahringer, Thomas and Moritsch, Hans},
  booktitle={High Performance Computing, Networking, Storage and Analysis (SC), 2012 International Conference for},
  pages={1--12},
  year={2012},
  organization={IEEE}
}
@article{xu2008satzilla,
  title={SATzilla: portfolio-based algorithm selection for SAT},
  author={Xu, Lin and Hutter, Frank and Hoos, Holger H and Leyton-Brown, Kevin},
  journal={Journal of Artificial Intelligence Research},
  pages={565--606},
  year={2008}
}
@article{spillinger2015matrix,
  title={Matrix Multiplication Algorithm Selection with Support Vector Machines},
  author={Spillinger, Omer and Eliahu, David and Fox, Armando and Demmel, James},
  year={2015}
}
@phdthesis{eliahu2015frpa,
  title={FRPA: A Framework for Recursive Parallel Algorithms},
  author={Eliahu, David and Spillinger, Omer and Fox, Armando and Demmel, James},
  year={2015},
  school={Master’s thesis, EECS Department, University of California, Berkeley}
}
@inproceedings{felber2008dynamic,
  title={Dynamic performance tuning of word-based software transactional memory},
  author={Felber, Pascal and Fetzer, Christof and Riegel, Torvald},
  booktitle={Proceedings of the 13th ACM SIGPLAN Symposium on Principles and practice of parallel programming},
  pages={237--246},
  year={2008},
  organization={ACM}
}
@inproceedings{datta2008stencil,
  title={Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures},
  author={Datta, Kaushik and Murphy, Mark and Volkov, Vasily and Williams, Samuel and Carter, Jonathan and Oliker, Leonid and Patterson, David and Shalf, John and Yelick, Katherine},
  booktitle={Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
  pages={4},
  year={2008},
  organization={IEEE Press}
}
@phdthesis{ragan2014decoupling,
  title={Decoupling algorithms from the organization of computation for high performance image processing},
  author={Ragan-Kelley, Jonathan Millard},
  year={2014},
  school={Massachusetts Institute of Technology}
}
@inproceedings{truong2014extensible,
  title={An Extensible Framework for Composing Stencils with Common Scientific Computing Patterns},
  author={Truong, Leonard and Markley, Chick and Fox, Armando},
  booktitle={Proceedings of the Second Workshop on Optimizing Stencil Computations},
  pages={33--40},
  year={2014},
  organization={ACM}
}
@inproceedings{mullapudi2015polymage,
  title={Polymage: Automatic optimization for image processing pipelines},
  author={Mullapudi, Ravi Teja and Vasista, Vinay and Bondhugula, Uday},
  booktitle={Proceedings of the Twentieth International Conference on Architectural Support for Programming Languages and Operating Systems},
  pages={429--443},
  year={2015},
  organization={ACM}
}
@book{bosboom2014streamjit,
  title={StreamJIT: A commensal compiler for high-performance stream programming},
  author={Bosboom, Jeffrey and Rajadurai, Sumanaruban and Wong, Weng-Fai and Amarasinghe, Saman},
  volume={49},
  number={10},
  year={2014},
  publisher={ACM}
}
@inproceedings{zhao2010umbra,
  title={Umbra: Efficient and scalable memory shadowing},
  author={Zhao, Qin and Bruening, Derek and Amarasinghe, Saman},
  booktitle={Proceedings of the 8th annual IEEE/ACM international symposium on Code generation and optimization},
  pages={22--31},
  year={2010},
  organization={ACM}
}
@article{ragan2013halide,
  title={Halide: a language and compiler for optimizing parallelism, locality, and recomputation in image processing pipelines},
  author={Ragan-Kelley, Jonathan and Barnes, Connelly and Adams, Andrew and Paris, Sylvain and Durand, Fr{\'e}do and Amarasinghe, Saman},
  journal={ACM SIGPLAN Notices},
  volume={48},
  number={6},
  pages={519--530},
  year={2013},
  publisher={ACM}
}
@article{olszewski2009kendo,
  title={Kendo: efficient deterministic multithreading in software},
  author={Olszewski, Marek and Ansel, Jason and Amarasinghe, Saman},
  journal={ACM Sigplan Notices},
  volume={44},
  number={3},
  pages={97--108},
  year={2009},
  publisher={ACM}
}
@article{tartara2013continuous,
  title={Continuous learning of compiler heuristics},
  author={Tartara, Michele and Crespi Reghizzi, Stefano},
  journal={ACM Transactions on Architecture and Code Optimization (TACO)},
  volume={9},
  number={4},
  pages={46},
  year={2013},
  publisher={ACM}
}
@phdthesis{tartara2013machine,
  title={Machine learning of compiler heuristics for parallel architectures},
  author={Tartara, Michele},
  year={2013},
  school={Politecnico di Milano}
}
@article{fialho2010analyzing,
  title={Analyzing bandit-based adaptive operator selection mechanisms},
  author={Fialho, {\'A}lvaro and Da Costa, Luis and Schoenauer, Marc and Sebag, Mich{\`e}le},
  journal={Annals of Mathematics and Artificial Intelligence},
  volume={60},
  number={1-2},
  pages={25--64},
  year={2010},
  publisher={Springer}
}
@incollection{pacula2012hyperparameter,
  title={Hyperparameter tuning in bandit-based adaptive operator selection},
  author={Pacula, Maciej and Ansel, Jason and Amarasinghe, Saman and O’Reilly, Una-May},
  booktitle={Applications of Evolutionary Computation},
  pages={73--82},
  year={2012},
  publisher={Springer}
}
@article{auer2002finite,
  title={Finite-time analysis of the multiarmed bandit problem},
  author={Auer, Peter and Cesa-Bianchi, Nicolo and Fischer, Paul},
  journal={Machine learning},
  volume={47},
  number={2-3},
  pages={235--256},
  year={2002},
  publisher={Springer}
}
@incollection{misailovic2011probabilistically,
  title={Probabilistically accurate program transformations},
  author={Misailovic, Sasa and Roy, Daniel M and Rinard, Martin C},
  booktitle={Static Analysis},
  pages={316--333},
  year={2011},
  publisher={Springer}
}
@article{demmel2005self,
  title={Self-adapting linear algebra algorithms and software},
  author={Demmel, James and Dongarra, Jack and Eijkhout, Victor and Fuentes, Erika and Petitet, Antoine and Vuduc, Richard and Whaley, R Clint and Yelick, Katherine},
  journal={Proceedings of the IEEE},
  volume={93},
  number={2},
  pages={293--312},
  year={2005},
  publisher={IEEE}
}
@article{dongarra2006self,
  title={Self-adapting numerical software (SANS) effort},
  author={Dongarra, Jack and Bosilca, George and Chen, Zizhong and Eijkhout, Victor and Fagg, Graham E and Fuentes, Erika and Langou, Julien and Luszczek, Piotr and Pjesivac-Grbovic, Jelena and Seymour, Keith and others},
  journal={IBM Journal of Research and Development},
  volume={50},
  number={2.3},
  pages={223--238},
  year={2006},
  publisher={IBM}
}
@article{williams2009optimization,
  title={Optimization of sparse matrix--vector multiplication on emerging multicore platforms},
  author={Williams, Samuel and Oliker, Leonid and Vuduc, Richard and Shalf, John and Yelick, Katherine and Demmel, James},
  journal={Parallel Computing},
  volume={35},
  number={3},
  pages={178--194},
  year={2009},
  publisher={Elsevier}
}
@inproceedings{vuduc2005oski,
  title={{OSKI}: A library of automatically tuned sparse matrix kernels},
  author={Vuduc, Richard and Demmel, James W and Yelick, Katherine A},
  booktitle={Journal of Physics: Conference Series},
  volume={16},
  number={1},
  pages={521},
  year={2005},
  organization={IOP Publishing}
}
@inproceedings{ali2007scheduling,
  title={Scheduling FFT computation on SMP and multicore systems},
  author={Ali, Ayaz and Johnsson, Lennart and Subhlok, Jaspal},
  booktitle={Proceedings of the 21st annual international conference on Supercomputing},
  pages={293--301},
  year={2007},
  organization={ACM}
}
@article{puschel2005spiral,
  title={SPIRAL: Code generation for DSP transforms},
  author={P{\"u}schel, Markus and Moura, Jos{\'e} MF and Johnson, Jeremy R and Padua, David and Veloso, Manuela M and Singer, Bryan W and Xiong, Jianxin and Franchetti, Franz and Ga{\v{c}}ic, Aca and Voronenko, Yevgen and others},
  journal={Proceedings of the IEEE},
  volume={93},
  number={2},
  pages={232--275},
  year={2005},
  publisher={IEEE}
}
@inproceedings{jordan2013inspire,
  title={INSPIRE: The insieme parallel intermediate representation},
  author={Jordan, Herbert and Pellegrini, Simone and Thoman, Peter and Kofler, Klaus and Fahringer, Thomas},
  booktitle={Proceedings of the 22nd international conference on Parallel architectures and compilation techniques},
  pages={7--18},
  year={2013},
  organization={IEEE Press}
}
@inproceedings{yu2004adaptive,
  title={An adaptive algorithm selection framework},
  author={Yu, Hao and Zhang, Dongmin and Rauchwerger, Lawrence},
  booktitle={Proceedings of the 13th International Conference on Parallel Architectures and Compilation Techniques},
  pages={278--289},
  year={2004},
  organization={IEEE Computer Society}
}
@inproceedings{bilmes2014author,
  title={Author retrospective for optimizing matrix multiply using {PHiPAC}: a portable high-performance {ANSI C} coding methodology},
  author={Bilmes, Jeff and Asanovic, Krste and Chin, Chee-Whye and Demmel, Jim},
  booktitle={ACM International Conference on Supercomputing 25th Anniversary Volume},
  pages={42--44},
  year={2014},
  organization={ACM}
}
@inproceedings{yotov2003comparison,
  title={A comparison of empirical and model-driven optimization},
  author={Yotov, Kamen and Li, Xiaoming and Ren, Gang and Cibulskis, Michael and DeJong, Gerald and Garzaran, Maria and Padua, David and Pingali, Keshav and Stodghill, Paul and Wu, Peng},
  booktitle={ACM SIGPLAN Notices},
  volume={38},
  number={5},
  pages={63--76},
  year={2003},
  organization={ACM}
}
@inproceedings{smith2000overcoming,
  title={Overcoming the challenges to feedback-directed optimization (Keynote Talk)},
  author={Smith, Michael D},
  booktitle={ACM SIGPLAN Notices},
  volume={35},
  number={7},
  pages={1--11},
  year={2000},
  organization={ACM}
}
@inproceedings{tiwari2009scalable,
  title={A scalable auto-tuning framework for compiler optimization},
  author={Tiwari, Ananta and Chen, Chun and Chame, Jacqueline and Hall, Mary and Hollingsworth, Jeffrey K},
  booktitle={Parallel \& Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on},
  pages={1--12},
  year={2009},
  organization={IEEE}
}
@article{hoffmann2010application,
  title={Application heartbeats for software performance and health},
  author={Hoffmann, Henry and Eastep, Jonathan and Santambrogio, Marco D and Miller, Jason E and Agarwal, Anant},
  journal={ACM Sigplan Notices},
  volume={45},
  number={5},
  pages={347--348},
  year={2010},
  publisher={ACM}
}
@inproceedings{hoffmann2010application2,
  title={Application heartbeats: a generic interface for specifying program performance and goals in autonomous computing environments},
  author={Hoffmann, Henry and Eastep, Jonathan and Santambrogio, Marco D and Miller, Jason E and Agarwal, Anant},
  booktitle={Proceedings of the 7th international conference on Autonomic computing},
  pages={79--88},
  year={2010},
  organization={ACM}
}
@article{paluska2008structured,
  title={Structured decomposition of adaptive applications},
  author={Paluska, Justin Mazzola and Pham, Hubert and Saif, Umar and Chau, Grace and Terman, Chris and Ward, Steve},
  journal={Pervasive and Mobile Computing},
  volume={4},
  number={6},
  pages={791--806},
  year={2008},
  publisher={Elsevier}
}
@inproceedings{thomas2005framework,
  title={A framework for adaptive algorithm selection in STAPL},
  author={Thomas, Nathan and Tanase, Gabriel and Tkachyshyn, Olga and Perdue, Jack and Amato, Nancy M and Rauchwerger, Lawrence},
  booktitle={Proceedings of the tenth ACM SIGPLAN symposium on Principles and practice of parallel programming},
  pages={277--288},
  year={2005},
  organization={ACM}
}
@techreport{cooper2002compilation,
  title={Compilation order matters},
  author={Cooper, K and Harvey, Timothy J and Subramanian, Devika and Torczon, Linda},
  year={2002},
  institution={Technical Report, Rice University}
}
@inproceedings{nagaraj2013parallel,
  title={Parallel flow-sensitive pointer analysis by graph-rewriting},
  author={Nagaraj, Vaivaswatha and Govindarajan, R},
  booktitle={Proceedings of the 22nd international conference on Parallel architectures and compilation techniques},
  pages={19--28},
  year={2013},
  organization={IEEE Press}
}
@inproceedings{barik2013interprocedural,
  title={Interprocedural strength reduction of critical sections in explicitly-parallel programs},
  author={Barik, Rajkishore and Zhao, Jisheng and Sarkar, Vivek},
  booktitle={Proceedings of the 22nd international conference on Parallel architectures and compilation techniques},
  pages={29--40},
  year={2013},
  organization={IEEE Press}
}
@article{demmel2009accelerating,
  title={Accelerating time-to-solution for computational science and engineering},
  author={Demmel, James and Dongarra, Jack and Fox, Armando and Williams, Sam and Volkov, Vasily and Yelick, Katherine},
  journal={SciDAC Review,(15)},
  year={2009}
}
@article{hoffmann2009partitioning,
  title={Partitioning strategies: spatiotemporal patterns of program decomposition},
  author={Hoffmann, Henry and Agarwal, Anantl and Devadas, Srinivas},
  year={2009},
  publisher={International Association of Science and Technology for Development}
}
@techreport{hoffmann2011seec,
  title={SEEC: A General and Extensible Framework for Self-Aware Computing,” Massachusetts Institute of Technology},
  author={Hoffmann, H},
  year={2011},
  institution={Tech. Rep}
}
@article{karcher2014autotuning,
  title={Autotuning and Self-Adaptability in Concurrency Libraries},
  author={Karcher, Thomas and Guckes, Christopher and Tichy, Walter F},
  journal={arXiv preprint arXiv:1405.2918},
  year={2014}
}
@inproceedings{lagoudakis2000algorithm,
  title={Algorithm Selection using Reinforcement Learning.},
  author={Lagoudakis, Michail G and Littman, Michael L},
  booktitle={ICML},
  pages={511--518},
  year={2000},
  organization={Citeseer}
}
@inproceedings{wolf1991data,
  title={A data locality optimizing algorithm},
  author={Wolf, Michael E and Lam, Monica S},
  booktitle={ACM Sigplan Notices},
  volume={26},
  number={6},
  pages={30--44},
  year={1991},
  organization={ACM}
}
@article{dongarra1998automatically,
  title={Automatically tuned linear algebra software ({ATLAS})},
  author={Dongarra, Jack J and Whaley, Clint R},
  journal={Proceedings of SC},
  volume={98},
  year={1998}
}
@inproceedings{bilmes1997optimizing,
  title={Optimizing matrix multiply using {PHiPAC}: a Portable, High-Performance, {ANSI C} coding methodology},
  author={Bilmes, Jeff and Asanovic, Krste and Chin, Chee-Whye and Demmel, Jim},
  booktitle={Proceedings of International Conference on Supercomputing, Vienna, Austria},
  year={1997}
}
@inproceedings{brewer1995high,
  title={High-level optimization via automated statistical modeling},
  author={Brewer, Eric A},
  booktitle={ACM SIGPLAN Notices},
  volume={30},
  number={8},
  pages={80--91},
  year={1995},
  organization={ACM}
}
@phdthesis{chan2012auto,
  title={Auto-tuning on the macro scale: high level algorithmic auto-tuning for scientific applications},
  author={Chan, Cy P},
  year={2012},
  school={Massachusetts Institute of Technology}
}
@article{granlund1992eliminating,
  title={Eliminating branches using a superoptimizer and the GNU C compiler},
  author={Granlund, Torbj{\"o}rn and Kenner, Richard},
  journal={ACM SIGPLAN Notices},
  volume={27},
  number={7},
  pages={341--352},
  year={1992},
  publisher={ACM}
}
@phdthesis{hoffmann2003stream,
  title={Stream algorithms and architecture},
  author={Hoffmann, Henry},
  year={2003},
  school={Massachusetts Institute of Technology}
}
@article{strumpen2004stream,
  title={Stream algorithms and architecture},
  author={Strumpen, Volker and Hoffmann, Henry and Agarwal, Anant},
  journal={Journal of Instruction-Level Parallelism},
  volume={6},
  pages={1--31},
  year={2004}
}
@inproceedings{hoffmann2012self,
  title={Self-aware computing in the Angstrom processor},
  author={Hoffmann, Henry and Holt, Jim and Kurian, George and Lau, Eric and Maggio, Martina and Miller, Jason E and Neuman, Sabrina M and Sinangil, Mahmut and Sinangil, Yildiz and Agarwal, Anant and others},
  booktitle={Design Automation Conference (DAC), 2012 49th ACM/EDAC/IEEE},
  pages={259--264},
  year={2012},
  organization={IEEE}
}
@article{hoffmann2012selecting,
  title={Selecting Spatiotemporal Patterns for Development of Parallel Applications},
  author={Hoffmann, Henry and Agarwal, Anant and Devadas, Srinivas},
  journal={Parallel and Distributed Systems, IEEE Transactions on},
  volume={23},
  number={10},
  pages={1970--1982},
  year={2012},
  publisher={IEEE}
}
@article{ivanenko2014method,
  title={Method of Automated Generation of Autotuners for Parallel Programs},
  author={Ivanenko, PA and Doroshenko, A Yu},
  journal={Cybernetics and Systems Analysis},
  volume={50},
  number={3},
  pages={465--475},
  year={2014},
  publisher={Springer}
}
@inproceedings{santiago2002statistical,
  title={A statistical approach for the analysis of the relation between low-level performance information, the code, and the environment},
  author={Santiago, Nayda G and Rover, Diane T and Rodr{\'\i}guez, Domingo},
  booktitle={Parallel Processing Workshops, 2002. Proceedings. International Conference on},
  pages={282--289},
  year={2002},
  organization={IEEE}
}
@inproceedings{spampinato2014basic,
  title={A basic linear algebra compiler},
  author={Spampinato, Daniele G and P{\"u}schel, Markus},
  booktitle={Proceedings of Annual IEEE/ACM International Symposium on Code Generation and Optimization},
  pages={23},
  year={2014},
  organization={ACM}
}
@inproceedings{tartara2012parallel,
  title={Parallel iterative compilation: using MapReduce to speedup machine learning in compilers},
  author={Tartara, Michele and Crespi Reghizzi, Stefano},
  booktitle={Proceedings of third international workshop on MapReduce and its Applications Date},
  pages={33--40},
  year={2012},
  organization={ACM}
}
@article{vuduc2004statistical,
  title={Statistical models for empirical search-based performance tuning},
  author={Vuduc, Richard and Demmel, James W and Bilmes, Jeff A},
  journal={International Journal of High Performance Computing Applications},
  volume={18},
  number={1},
  pages={65--94},
  year={2004},
  publisher={Sage Publications}
}
@article{whaley2005minimizing,
  title={Minimizing development and maintenance costs in supporting persistently optimized BLAS},
  author={Whaley, R Clint and Petitet, Antoine},
  journal={Software: Practice and Experience},
  volume={35},
  number={2},
  pages={101--121},
  year={2005},
  publisher={Wiley Online Library}
}
@article{williams2009roofline,
  title={Roofline: an insightful visual performance model for multicore architectures},
  author={Williams, Samuel and Waterman, Andrew and Patterson, David},
  journal={Communications of the ACM},
  volume={52},
  number={4},
  pages={65--76},
  year={2009},
  publisher={ACM}
}
@inproceedings{jain2015charm++,
  title={Charm++ and MPI: Combining the Best of Both Worlds},
  author={Jain, Nikhil and Bhatele, Abhinav and Yeom, Jae-Seung and Adams, Mark F and Miniati, Francesco and Mei, Chao and Kale, Laxmikant V},
  booktitle={Parallel and Distributed Processing Symposium (IPDPS), 2015 IEEE International},
  pages={655--664},
  year={2015},
  organization={IEEE}
}
@inproceedings{lifflander2014scalable,
  title={Scalable replay with partial-order dependencies for message-logging fault tolerance},
  author={Lifflander, Jonathan and Meneses, Esteban and Menon, Harshitha and Miller, Paul and Krishnamoorthy, Sriram and Kal{\'e}, Laxmikant V},
  booktitle={Cluster Computing (CLUSTER), 2014 IEEE International Conference on},
  pages={19--28},
  year={2014},
  organization={IEEE}
}
@book{kale1993charm++,
  title={CHARM++: a portable concurrent object oriented system based on C++},
  author={Kale, Laxmikant V and Krishnan, Sanjeev},
  volume={28},
  number={10},
  year={1993},
  publisher={ACM}
}
@inproceedings{maturana2009extreme,
  title={Extreme compass and dynamic multi-armed bandits for adaptive operator selection},
  author={Maturana, Jorge and Fialho, {\'A}lvaro and Saubion, Fr{\'e}d{\'e}ric and Schoenauer, Marc and Sebag, Michele},
  booktitle={Evolutionary Computation, 2009. CEC'09. IEEE Congress on},
  pages={365--372},
  year={2009},
  organization={IEEE}
}
@incollection{fialho2010comparison,
  title={Comparison-based adaptive strategy selection with bandits in differential evolution},
  author={Fialho, Alvaro and Ros, Raymond and Schoenauer, Marc and Sebag, Michele},
  booktitle={Parallel Problem Solving from Nature, PPSN XI},
  pages={194--203},
  year={2010},
  publisher={Springer}
}
@phdthesis{fialho2011adaptive,
  title={Adaptive operator selection for optimization},
  author={Fialho, {\'A}lvaro Roberto Silvestre},
  year={2011},
  school={Universit{\'e} Paris-Sud 11}
}
@article{cooper2002adaptive,
  title={Adaptive optimizing compilers for the 21st century},
  author={Cooper, Keith D and Subramanian, Devika and Torczon, Linda},
  journal={The Journal of Supercomputing},
  volume={23},
  number={1},
  pages={7--22},
  year={2002},
  publisher={Springer}
}
@incollection{an2001stapl,
  title={STAPL: An adaptive, generic parallel C++ library},
  author={An, Ping and Jula, Alin and Rus, Silvius and Saunders, Steven and Smith, Tim and Tanase, Gabriel and Thomas, Nathan and Amato, Nancy and Rauchwerger, Lawrence},
  booktitle={Languages and Compilers for Parallel Computing},
  pages={193--208},
  year={2001},
  publisher={Springer}
}
@inproceedings{nisbet1998gaps,
  title={GAPS: Iterative feedback directed parallelisation using genetic algorithms},
  author={Nisbet, Andy P},
  booktitle={Workshop on Profile and Feedback-Directed Compilation,(Paris, France)},
  year={1998},
  organization={Citeseer}
}
@inproceedings{nisbet1998gaps2,
  title={GAPS: A compiler framework for genetic algorithm (GA) optimised parallelisation},
  author={Nisbet, Andy},
  booktitle={High-Performance Computing and Networking},
  pages={987--989},
  year={1998},
  organization={Springer}
}
@inproceedings{frigo1998fftw,
  title={{FFTW}: An adaptive software architecture for the FFT},
  author={Frigo, Matteo and Johnson, Steven G},
  booktitle={Acoustics, Speech and Signal Processing, 1998. Proceedings of the 1998 IEEE International Conference on},
  volume={3},
  pages={1381--1384},
  year={1998},
  organization={IEEE}
}

% Algorithm Selection

@incollection{aleman2015meta,
  title={Meta-algorithms},
  author={Aleman, Dionne and Thiele, Aur{\'e}lie and Smith, J Cole and Greenberg, Harvey J and Sellmann, Meinolf},
  booktitle={The Operations Research Revolution},
  pages={47--55},
  year={2015},
  publisher={INFORMS}
}
@inproceedings{rice1976algorithm,
  title={The algorithm selection problem},
  author={Rice, John R},
  booktitle={Advances in Computers 15},
  pages={65--118},
  year={1976}
}
@article{bischl2015aslib,
  title={Aslib: A benchmark library for algorithm selection},
  author={Bischl, Bernd and Kerschke, Pascal and Kotthoff, Lars and Lindauer, Marius and Malitsky, Yuri and Fr{\'e}chette, Alexandre and Hoos, Holger and Hutter, Frank and Leyton-Brown, Kevin and Tierney, Kevin and others},
  journal={arXiv preprint arXiv:1506.02465},
  year={2015}
}
@inproceedings{kotthoff2012hybrid,
  title={Hybrid Regression-Classification Models for Algorithm Selection.},
  author={Kotthoff, Lars},
  booktitle={ECAI},
  pages={480--485},
  year={2012}
}
@incollection{hoos2011automated,
  title={Automated algorithm configuration and parameter tuning},
  author={Hoos, Holger H},
  booktitle={Autonomous search},
  pages={37--71},
  year={2012},
  publisher={Springer-Verlag Berlin Heidelberg}
}
@book{hamadi2012autonomous,
  title={Autonomous Search},
  author={Hamadi, Youssef and Monfroy, Eric and Saubion, Fr{\'e}d{\'e}ric},
  publisher={Springer-Verlag Berlin Heidelberg},
  year={2012}
}
@incollection{hamadi2011autonomous,
  title={What is autonomous search?},
  author={Hamadi, Youssef and Monfroy, Eric and Saubion, Fr{\'e}d{\'e}ric},
  booktitle={Hybrid Optimization},
  pages={357--391},
  year={2011},
  publisher={Springer}
}
@article{hoos2012programming,
  title={Programming by optimization},
  author={Hoos, Holger H},
  journal={Communications of the ACM},
  volume={55},
  number={2},
  pages={70--80},
  year={2012},
  publisher={ACM}
}
@article{guo2007machine,
  title={A machine learning approach to algorithm selection for$\backslash$ mathcal $\{$NP$\}$-hard optimization problems: a case study on the MPE problem},
  author={Guo, Haipeng and Hsu, William H},
  journal={Annals of Operations Research},
  volume={156},
  number={1},
  pages={61--82},
  year={2007},
  publisher={Springer}
}
@inproceedings{armstrong2006dynamic,
  title={Dynamic algorithm selection using reinforcement learning},
  author={Armstrong, Warren and Christen, Peter and McCreath, Eric and Rendell, Alistair P},
  booktitle={Integrating AI and Data Mining, 2006. AIDM'06. International Workshop on},
  pages={18--25},
  year={2006},
  organization={IEEE}
}
@article{gagliolo2006learning,
  title={Learning dynamic algorithm portfolios},
  author={Gagliolo, Matteo and Schmidhuber, J{\"u}rgen},
  journal={Annals of Mathematics and Artificial Intelligence},
  volume={47},
  number={3-4},
  pages={295--328},
  year={2006},
  publisher={Springer}
}
@article{hogg1996phase,
  title={Phase transitions and the search problem},
  author={Hogg, Tad and Huberman, Bernardo A and Williams, Colin P},
  journal={Artificial intelligence},
  volume={81},
  number={1},
  pages={1--15},
  year={1996},
  publisher={Elsevier}
}
@incollection{nudelman2004understanding,
  title={Understanding random SAT: Beyond the clauses-to-variables ratio},
  author={Nudelman, Eugene and Leyton-Brown, Kevin and Hoos, Holger H and Devkar, Alex and Shoham, Yoav},
  booktitle={Principles and Practice of Constraint Programming--CP 2004},
  pages={438--452},
  year={2004},
  publisher={Springer}
}
@article{smith2009cross,
  title={Cross-disciplinary perspectives on meta-learning for algorithm selection},
  author={Smith-Miles, Kate A},
  journal={ACM Computing Surveys (CSUR)},
  volume={41},
  number={1},
  pages={6},
  year={2009},
  publisher={ACM}
}
@phdthesis{guo2003algorithm,
  title={Algorithm selection for sorting and probabilistic inference: a machine learning-based approach},
  author={Guo, Haipeng},
  year={2003},
  school={Citeseer}
}
@inproceedings{lindauer2015autofolio,
  title={Autofolio: Algorithm configuration for algorithm selection},
  author={Lindauer, Marius and Hoos, H and Hutter, Frank and Schaub, Torsten},
  booktitle={Proceedings of Workshops at AAAI},
  year={2015}
}
@inproceedings{yuen2013algorithm,
  title={Which algorithm should I choose at any point of the search: an evolutionary portfolio approach},
  author={Yuen, Shiu Yin and Chow, Chi Kin and Zhang, Xin},
  booktitle={Proceedings of the 15th annual conference on Genetic and evolutionary computation},
  pages={567--574},
  year={2013},
  organization={ACM}
}
@article{kotthoff2012algorithm,
  title={Algorithm selection for combinatorial search problems: A survey},
  author={Kotthoff, Lars},
  journal={arXiv preprint arXiv:1210.7959},
  year={2012}
}
@article{fischetti2014exploiting,
  title={Exploiting erraticism in search},
  author={Fischetti, Matteo and Monaci, Michele},
  journal={Operations Research},
  volume={62},
  number={1},
  pages={114--122},
  year={2014},
  publisher={INFORMS}
}
@inproceedings{oentaryo2015algorithm,
  title={Algorithm Selection via Ranking.},
  author={Oentaryo, Richard Jayadi and Handoko, Stephanus Daniel and Lau, Hoong Chuin},
  booktitle={AAAI},
  pages={1826--1832},
  year={2015}
}
@inproceedings{gomes1997algorithm,
  title={Algorithm portfolio design: Theory vs. practice},
  author={Gomes, Carla P and Selman, Bart},
  booktitle={Proceedings of the Thirteenth conference on Uncertainty in artificial intelligence},
  pages={190--197},
  year={1997},
  organization={Morgan Kaufmann Publishers Inc.}
}
@article{haugh2004monte,
  title={The Monte Carlo framework, examples from finance and generating correlated random variables},
  author={Haugh, Martin},
  journal={Course Notes},
  year={2004}
}
@article{joulani2013online,
  title={Online learning under delayed feedback},
  author={Joulani, Pooria and Gy{\"o}rgy, Andr{\'a}s and Szepesv{\'a}ri, Csaba},
  journal={arXiv preprint arXiv:1306.0686},
  year={2013}
}
@inproceedings{lepping2013accelerating,
  title={Accelerating population-based search heuristics by adaptive resource allocation},
  author={Lepping, Joachim and Mertikopoulos, Panayotis and Trystram, Denis},
  booktitle={Proceedings of the 15th annual conference on Genetic and evolutionary computation},
  pages={1165--1172},
  year={2013},
  organization={ACM}
}

% Stochastic Search

@article{hutter2009paramils,
  title={{ParamILS}: an automatic algorithm configuration framework},
  author={Hutter, Frank and Hoos, Holger H and Leyton-Brown, Kevin and St{\"u}tzle, Thomas},
  journal={Journal of Artificial Intelligence Research},
  volume={36},
  number={1},
  pages={267--306},
  year={2009}
}
@article{schkufza2016stochastic,
  title={Stochastic program optimization},
  author={Schkufza, Eric and Sharma, Rahul and Aiken, Alex},
  journal={Communications of the ACM},
  volume={59},
  number={2},
  pages={114--122},
  year={2016},
  publisher={ACM}
}
@inproceedings{dubois2015empirical,
  title={On the Empirical Scaling Behaviour of State-of-the-art Local Search Algorithms for the Euclidean TSP},
  author={Dubois-Lacoste, J{\'e}r{\'e}mie and Hoos, Holger H and St{\"u}tzle, Thomas},
  booktitle={Proceedings of the 2015 on Genetic and Evolutionary Computation Conference},
  pages={377--384},
  year={2015},
  organization={ACM}
}
@article{kirkpatrick1983optimization,
  title={Optimization by Simmulated Annealing},
  author={Kirkpatrick, Scott and Vecchi, Mario P and others},
  journal={Science},
  volume={220},
  number={4598},
  pages={671--680},
  year={1983},
  publisher={Washington}
}
@incollection{hoos2015stochastic,
  title={Stochastic Local Search Algorithms: An Overview},
  author={Hoos, Holger H and St{\"u}tzle, Thomas},
  booktitle={Springer Handbook of Computational Intelligence},
  pages={1085--1105},
  year={2015},
  publisher={Springer}
}
@book{hoos2004stochastic,
  title={Stochastic local search: Foundations \& applications},
  author={Hoos, Holger H and St{\"u}tzle, Thomas},
  year={2004},
  publisher={Elsevier}
}
@article{leyton2014understanding,
  title={Understanding the empirical hardness of NP-complete problems},
  author={Leyton-Brown, Kevin and Hoos, Holger H and Hutter, Frank and Xu, Lin},
  journal={Communications of the ACM},
  volume={57},
  number={5},
  pages={98--107},
  year={2014},
  publisher={ACM}
}

% Architecture Simulation

@inproceedings{sanchez2013zsim,
  title={ZSim: fast and accurate microarchitectural simulation of thousand-core systems},
  author={Sanchez, Daniel and Kozyrakis, Christos},
  booktitle={ACM SIGARCH Computer Architecture News},
  volume={41},
  number={3},
  pages={475--486},
  year={2013},
  organization={ACM}
}

% Automatic Parallelization

@article{rubensson2014chunks,
  title={Chunks and Tasks: A programming model for parallelization of dynamic algorithms},
  author={Rubensson, Emanuel H and Rudberg, Elias},
  journal={Parallel Computing},
  volume={40},
  number={7},
  pages={328--343},
  year={2014},
  publisher={Elsevier}
}
@inproceedings{andion2014parallelizing,
  title={A parallelizing compiler for multicore systems},
  author={Andi{\'o}n, Jos{\'e} M and Arenaz, Manuel and Rodr{\'\i}guez, Gabriel and Touri{\~n}o, Juan},
  booktitle={Proceedings of the 17th International Workshop on Software and Compilers for Embedded Systems},
  pages={138--141},
  year={2014},
  organization={ACM}
}
@article{arenaz2008xark,
  title={XARK: An extensible framework for automatic recognition of computational kernels},
  author={Arenaz, Manuel and Touri{\~n}o, Juan and Doallo, Ramon},
  journal={ACM Transactions on Programming Languages and Systems (TOPLAS)},
  volume={30},
  number={6},
  pages={32},
  year={2008},
  publisher={ACM}
}
@article{kennell1999automatic,
  title={Automatic parallelization of C by means of language transcription},
  author={Kennell, Richard L and Eigenmann, Rudolf},
  journal={Lecture notes in computer science},
  pages={166--180},
  year={1999},
  publisher={Springer}
}
@inproceedings{pop2006graphite,
  title={GRAPHITE: Polyhedral analyses and optimizations for GCC},
  author={Pop, Sebastian and Cohen, Albert and Bastoul, C{\'e}dric and Girbal, Sylvain and Silber, Georges-Andr{\'e} and Vasilache, Nicolas},
  booktitle={Proceedings of the 2006 GCC Developers Summit},
  pages={2006},
  year={2006},
  organization={Citeseer}
}

% Clouds for High Performance Computing

@inproceedings{gupta2012exploring,
  title={Exploring the Performance and Mapping of HPC Applications to Platforms in the Cloud},
  author={Gupta, Abhishek and Kal{\'e}, Laxmikant V and Milojicic, Dejan S and Faraboschi, Paolo and Kaufmann, Richard and March, Verdi and Gioachin, Filippo and Suen, Chun Hui and Lee, Bu-Sung},
  booktitle={Proceedings of the 21st international symposium on High-Performance Parallel and Distributed Computing},
  pages={121--122},
  year={2012},
  organization={ACM}
}
@inproceedings{lu2011can,
  title={Can cloud computing be used for planning? an initial study},
  author={Lu, Qiang and Xu, You and Huang, Ruoyun and Chen, Yixin and Chen, Guoliang},
  booktitle={Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on},
  pages={1--8},
  year={2011},
  organization={IEEE}
}
@article{polato2014comprehensive,
  title={A comprehensive view of Hadoop research—A systematic literature review},
  author={Polato, Ivanilton and R{\'e}, Reginaldo and Goldman, Alfredo and Kon, Fabio},
  journal={Journal of Network and Computer Applications},
  volume={46},
  pages={1--25},
  year={2014},
  publisher={Elsevier}
}
@inproceedings{gupta2013the,
  title={The who, what, why, and how of high performance computing in the cloud},
  author={Gupta, Arpan and Kale, Laxmikant V and Gioachin, Filippo and March, Victor and Suen, Chun Hui and Lee, Bu-Sung and Faraboschi, Paolo and Kaufmann, Richard and Milojicic, Dejan},
  booktitle={Cloud Computing Technology and Science (CloudCom), 2013 IEEE 5th International Conference on},
  volume={1},
  pages={306--314},
  year={2013},
  organization={IEEE}
}
@article{gupta2014evaluating,
  title={Evaluating and Improving the Performance and Scheduling of HPC Applications in Cloud},
  author={Gupta, Arpan and Faraboschi, Paolo and Gioachin, Filippo and Kale, Laxmikant V and Kaufmann, Richard and Lee, Bu-Sung and March, Victor and Milojicic, Dejan and Suen, Chun Hui},
  year={2014},
  publisher={IEEE}
}
@phdthesis{gupta2014techniques,
  title={Techniques for efficient high performance computing in the cloud},
  author={Gupta, Abhishek},
  year={2014},
  school={University of Illinois at Urbana-Champaign}
}

% Cloud Performance Prediction

@inproceedings{li2011cloudprophet,
  title={CloudProphet: towards application performance prediction in cloud},
  author={Li, Ang and Zong, Xuanran and Kandula, Srikanth and Yang, Xiaowei and Zhang, Ming},
  booktitle={ACM SIGCOMM Computer Communication Review},
  volume={41},
  number={4},
  pages={426--427},
  year={2011},
  organization={ACM}
}
@incollection{eichelberger2012variability,
  title={Variability in service-oriented systems: an analysis of existing approaches},
  author={Eichelberger, Holger and Kr{\"o}her, Christian and Schmid, Klaus},
  booktitle={Service-Oriented Computing},
  pages={516--524},
  year={2012},
  publisher={Springer}
}
@inproceedings{quinton2014automated,
  title={Automated selection and configuration of cloud environments using software product lines principles},
  author={Quinton, Cl{\'e}ment and Romero, Daniel and Duchien, Laurence},
  booktitle={Cloud Computing (CLOUD), 2014 IEEE 7th International Conference on},
  pages={144--151},
  year={2014},
  organization={IEEE}
}
@article{islam2012empirical,
  title={Empirical prediction models for adaptive resource provisioning in the cloud},
  author={Islam, Sadeka and Keung, Jacky and Lee, Kevin and Liu, Anna},
  journal={Future Generation Computer Systems},
  volume={28},
  number={1},
  pages={155--162},
  year={2012},
  publisher={Elsevier}
}

% Haskell Automatic Parallelization

@incollection{marlow2012parallel,
  title={Parallel and concurrent programming in Haskell},
  author={Marlow, Simon},
  booktitle={Central European Functional Programming School},
  pages={339--401},
  year={2012},
  publisher={Springer}
}
@inproceedings{marlow2010seq,
  title={Seq no more: better strategies for parallel Haskell},
  author={Marlow, Simon and Maier, Patrick and Loidl, Hans-Wolfgang and Aswad, Mustafa K and Trinder, Phil},
  booktitle={ACM Sigplan Notices},
  volume={45},
  number={11},
  pages={91--102},
  year={2010},
  organization={ACM}
}
@article{hammond2003automatic,
  title={Automatic skeletons in template haskell},
  author={Hammond, Kevin and Berthold, Jost and Loogen, Rita},
  journal={Parallel processing letters},
  volume={13},
  number={03},
  pages={413--424},
  year={2003},
  publisher={World Scientific}
}
@inproceedings{harris2007feedback,
  title={Feedback directed implicit parallelism},
  author={Harris, Tim and Singh, Satnam},
  booktitle={ACM SIGPLAN Notices},
  volume={42},
  number={9},
  pages={251--264},
  year={2007},
  organization={ACM}
}
@inproceedings{marlow2009runtime,
  title={Runtime support for multicore Haskell},
  author={Marlow, Simon and Peyton Jones, Simon and Singh, Satnam},
  booktitle={ACM Sigplan Notices},
  volume={44},
  number={9},
  pages={65--78},
  year={2009},
  organization={ACM}
}

% High Performance Computer Architecture

@inproceedings{xie2015coordinated,
  title={Coordinated static and dynamic cache bypassing for GPUs},
  author={Xie, Xiaolong and Liang, Yun and Wang, Yu and Sun, Guangyu and Wang, Tao},
  booktitle={High Performance Computer Architecture (HPCA), 2015 IEEE 21st International Symposium on},
  pages={76--88},
  year={2015},
  organization={IEEE}
}
@inproceedings{moreau2015snnap,
  title={SNNAP: Approximate computing on programmable socs via neural acceleration},
  author={Moreau, Thierry and Wyse, Mark and Nelson, Jacob and Sampson, Adrian and Esmaeilzadeh, Hadi and Ceze, Luis and Oskin, Mark},
  booktitle={High Performance Computer Architecture (HPCA), 2015 IEEE 21st International Symposium on},
  pages={603--614},
  year={2015},
  organization={IEEE}
}

% ICPP 2013

@inproceedings{li2013discovery,
  title={Discovery of potential parallelism in sequential programs},
  author={Li, Zhen and Jannesari, Abumoslem and Wolf, Felix},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={1004--1013},
  year={2013},
  organization={IEEE}
}
@inproceedings{akel2013source,
  title={Is Source-Code Isolation Viable for Performance Characterization?},
  author={Akel, Chadi and Kashnikov, Yuriy and de Oliveira Castro, Pablo and Jalby, William},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={977--984},
  year={2013},
  organization={IEEE}
}
@inproceedings{tang2013performance,
  title={Performance Tuning on Multicore Systems for Feature Matching within Image Collections},
  author={Tang, Xiaoxin and Mills, Steven and Eyers, David and Huang, Zhiyi and Leung, Kai-Cheung and Guo, Minyi},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={718--727},
  year={2013},
  organization={IEEE}
}
@inproceedings{inggs2013heterogeneous,
  title={A heterogeneous computing framework for computational finance},
  author={Inggs, Gordon and Thomas, David and Luk, Wayne},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={688--697},
  year={2013},
  organization={IEEE}
}
@inproceedings{hofmann2013efficient,
  title={Efficient Data Redistribution Methods for Coupled Parallel Particle Codes},
  author={Hofmann, Martin and Runger, Gudula},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={40--49},
  year={2013},
  organization={IEEE}
}
@inproceedings{dollinger2013adaptive,
  title={Adaptive runtime selection for GPU},
  author={Dollinger, Jean-Fran{\c{c}}ois and Loechner, Vincent},
  booktitle={Parallel Processing (ICPP), 2013 42nd International Conference on},
  pages={70--79},
  year={2013},
  organization={IEEE}
}

% NP-problems

@article{de1981bin,
  title={Bin packing can be solved within 1+ $\varepsilon$ in linear time},
  author={de La Vega, W Fernandez and Lueker, George S.},
  journal={Combinatorica},
  volume={1},
  number={4},
  pages={349--355},
  year={1981},
  publisher={Springer}
}
@article{reinelt1991tsplib,
  title={TSPLIB—A traveling salesman problem library},
  author={Reinelt, Gerhard},
  journal={ORSA journal on computing},
  volume={3},
  number={4},
  pages={376--384},
  year={1991},
  publisher={INFORMS}
}

% Optimization Techniques

@article{rosenbrock1960automatic,
  title={An automatic method for finding the greatest or least value of a function},
  author={Rosenbrock, HoHo},
  journal={The Computer Journal},
  volume={3},
  number={3},
  pages={175--184},
  year={1960},
  publisher={Oxford University Press}
}
@article{nelder1965simplex,
  title={A simplex method for function minimization},
  author={Nelder, John A and Mead, Roger},
  journal={The computer journal},
  volume={7},
  number={4},
  pages={308--313},
  year={1965},
  publisher={Br Computer Soc}
}

% Parallel Computing Elsevier

@article{andion2013novel,
  title={A novel compiler support for automatic parallelization on multicore systems},
  author={Andi{\'o}n, Jos{\'e} M and Arenaz, Manuel and Rodr{\'\i}guez, Gabriel and Touri{\~n}o, Juan},
  journal={Parallel Computing},
  volume={39},
  number={9},
  pages={442--460},
  year={2013},
  publisher={Elsevier}
}
@article{albayrak2013improving,
  title={Improving application behavior on heterogeneous manycore systems through kernel mapping},
  author={Albayrak, Omer Erdil and Akturk, Ismail and Ozturk, Ozcan},
  journal={Parallel Computing},
  volume={39},
  number={12},
  pages={867--878},
  year={2013},
  publisher={Elsevier}
}
@article{gardner2013characterizing,
  title={Characterizing the challenges and evaluating the efficacy of a {CUDA}-to-{OpenCL} translator},
  author={Gardner, Mark and Sathre, Paul and Feng, Wu-chun and Martinez, Gabriel},
  journal={Parallel Computing},
  volume={39},
  number={12},
  pages={769--786},
  year={2013},
  publisher={Elsevier}
}
@article{hussain2013survey,
  title={A survey on resource allocation in high performance distributed computing systems},
  author={Hussain, Hameed and Malik, Saif Ur Rehman and Hameed, Abdul and Khan, Samee Ullah and Bickler, Gage and Min-Allah, Nasro and Qureshi, Muhammad Bilal and Zhang, Limin and Yongji, Wang and Ghani, Nasir and others},
  journal={Parallel Computing},
  volume={39},
  number={11},
  pages={709--736},
  year={2013},
  publisher={Elsevier}
}
@article{selim2014carrying,
  title={Carrying on the legacy of imperative languages in the future parallel computing era},
  author={Selim, Mohammad Reza and Rahman, Mohammed Ziaur},
  journal={Parallel Computing},
  volume={40},
  number={3},
  pages={1--33},
  year={2014},
  publisher={Elsevier}
}
@article{sheng2014compiler,
  title={A compiler infrastructure for embedded heterogeneous MPSoCs},
  author={Sheng, Weihua and Sch{\"u}rmans, Stefan and Odendahl, Maximilian and Bertsch, Mark and Volevach, Vitaliy and Leupers, Rainer and Ascheid, Gerd},
  journal={Parallel Computing},
  volume={40},
  number={2},
  pages={51--68},
  year={2014},
  publisher={Elsevier}
}

% Petabricks / OpenTuner

@inproceedings{ansel2014opentuner,
  title={Opentuner: An extensible framework for program autotuning},
  author={Ansel, Jason and Kamil, Shoaib and Veeramachaneni, Kalyan and Ragan-Kelley, Jonathan and Bosboom, Jeffrey and O'Reilly, Una-May and Amarasinghe, Saman},
  booktitle={Proceedings of the 23rd International Conference on Parallel Architectures and Compilation Techniques},
  pages={303--316},
  year={2014},
  organization={ACM}
}
@phdthesis{ansel2014autotuning,
  title={Autotuning programs with algorithmic choice},
  author={Ansel, Jason},
  year={2014},
  school={Massachusetts Institute of Technology}
}
@book{ansel2009petabricks,
  title={PetaBricks: a language and compiler for algorithmic choice},
  author={Ansel, Jason and Chan, Cy and Wong, Yee Lok and Olszewski, Marek and Zhao, Qin and Edelman, Alan and Amarasinghe, Saman},
  volume={44},
  number={6},
  year={2009},
  publisher={ACM}
}
@inproceedings{ansel2011efficient,
  title={An efficient evolutionary algorithm for solving incrementally structured problems},
  author={Ansel, Jason and Pacula, Maciej and Amarasinghe, Saman and O'Reilly, Una-May},
  booktitle={Proceedings of the 13th annual conference on Genetic and evolutionary computation},
  pages={1699--1706},
  year={2011},
  organization={ACM}
}
@inproceedings{ansel2011language,
  title={Language and compiler support for auto-tuning variable-accuracy algorithms},
  author={Ansel, Jason and Wong, Yee Lok and Chan, Cy and Olszewski, Marek and Edelman, Alan and Amarasinghe, Saman},
  booktitle={Proceedings of the 9th Annual IEEE/ACM International Symposium on Code Generation and Optimization},
  pages={85--96},
  year={2011},
  organization={IEEE Computer Society}
}
@inproceedings{chan2009autotuning,
  title={Autotuning multigrid with petabricks},
  author={Chan, Cy and Ansel, Jason and Wong, Yee Lok and Amarasinghe, Saman and Edelman, Alan},
  booktitle={High Performance Computing Networking, Storage and Analysis, Proceedings of the Conference on},
  pages={1--12},
  year={2009},
  organization={IEEE}
}
@article{ansel2010petabricks,
  title={PetaBricks},
  author={Ansel, Jason and Chan, Cy},
  journal={XRDS: Crossroads, The ACM Magazine for Students},
  volume={17},
  number={1},
  pages={32--37},
  year={2010},
  publisher={ACM}
}
@inproceedings{misailovic2010quality,
  title={Quality of service profiling},
  author={Misailovic, Sasa and Sidiroglou, Stelios and Hoffmann, Henry and Rinard, Martin},
  booktitle={Proceedings of the 32nd ACM/IEEE International Conference on Software Engineering-Volume 1},
  pages={25--34},
  year={2010},
  organization={ACM}
}
@phdthesis{watanaprakornkul2012distributed,
  title={Distributed data as a choice in PetaBricks},
  author={Watanaprakornkul, Phumpong},
  year={2012},
  school={Citeseer}
}
@phdthesis{wong2011high,
  title={High-performance computing with PetaBricks and Julia},
  author={Wong, Yee Lok and others},
  year={2011},
  school={Massachusetts Institute of Technology}
}

% Portfolio / AMF

@incollection{gagliolo2010algorithm,
  title={Algorithm selection as a bandit problem with unbounded losses},
  author={Gagliolo, Matteo and Schmidhuber, J{\"u}rgen},
  booktitle={Learning and Intelligent Optimization},
  pages={82--96},
  year={2010},
  publisher={Springer}
}
@inproceedings{bougeret2009combining,
  title={Combining multiple heuristics on discrete resources},
  author={Bougeret, Marin and Dutot, Pierre-Fran{\c{c}}ois and Goldman, Alfredo and Ngoko, Yanik and Trystram, Denis},
  booktitle={Parallel \& Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on},
  pages={1--8},
  year={2009},
  organization={IEEE}
}
@article{gomes2001algorithm,
  title={Algorithm portfolios},
  author={Gomes, Carla P and Selman, Bart},
  journal={Artificial Intelligence},
  volume={126},
  number={1},
  pages={43--62},
  year={2001},
  publisher={Elsevier}
}
@incollection{el2005taxonomy,
  title={A taxonomy of cooperative search algorithms},
  author={El-Abd, Mohammed and Kamel, Mohamed},
  booktitle={Hybrid Metaheuristics},
  pages={32--41},
  year={2005},
  publisher={Springer}
}
@article{huberman1997economics,
  title={An economics approach to hard computational problems},
  author={Huberman, Bernardo A and Lukose, Rajan M and Hogg, Tad},
  journal={Science},
  volume={275},
  number={5296},
  pages={51--54},
  year={1997},
  publisher={American Association for the Advancement of Science}
}
@article{bougeret2011approximating,
  title={Approximating the discrete resource sharing scheduling problem},
  author={Bougeret, Marin and Dutot, Pierre-Fran{\c{c}}ois and Goldman, Alfredo and Ngoko, Yanik and Trystram, Denis},
  journal={International Journal of Foundations of Computer Science},
  volume={22},
  number={03},
  pages={639--656},
  year={2011},
  publisher={World Scientific}
}
@inproceedings{goldman2012malleable,
  title={Malleable resource sharing algorithms for cooperative resolution of problems},
  author={Goldman, Alfredo and Ngoko, Yanik and Trystram, Denis},
  booktitle={Evolutionary Computation (CEC), 2012 IEEE Congress on},
  pages={1--8},
  year={2012},
  organization={IEEE}
}

% Scientific Programming 22(4)

@article{fursin2014collective,
  title={Collective mind: Towards practical and collaborative auto-tuning},
  author={Fursin, Grigori and Miceli, Renato and Lokhmotov, Anton and Gerndt, Michael and Baboulin, Marc and Malony, Allen D and Chamski, Zbigniew and Novillo, Diego and Del Vento, Davide},
  journal={Scientific Programming},
  volume={22},
  number={4},
  pages={309--329},
  year={2014},
  publisher={Hindawi Publishing Corporation}
}
@article{tanaka2014implementation,
  title={Implementation of d-Spline-based incremental performance parameter estimation method with ppOpen-AT},
  author={Tanaka, Teruo and Otsuka, Ryo and Fujii, Akihiro and Katagiri, Takahiro and Imamura, Toshiyuki},
  journal={Scientific Programming},
  volume={22},
  number={4},
  pages={299--307},
  year={2014},
  publisher={Hindawi Publishing Corporation}
}
@article{durillo2014single,
  title={From single-to multi-objective auto-tuning of programs: Advantages and implications},
  author={Durillo, Juan and Fahringer, Thomas},
  journal={Scientific Programming},
  volume={22},
  number={4},
  pages={285--297},
  year={2014},
  publisher={Hindawi Publishing Corporation}
}
@article{schone2014tools,
  title={Tools and methods for measuring and tuning the energy efficiency of HPC systems},
  author={Sch{\"o}ne, Robert and Treibig, Jan and Dolz, Manuel F and Guillen, Carla and Navarrete, Carmen and Knobloch, Michael and Rountree, Barry},
  journal={Scientific programming},
  volume={22},
  number={4},
  pages={273--283},
  year={2014},
  publisher={Hindawi Publishing Corporation}
}
@article{martinez2014elastic,
  title={ELASTIC: A large scale dynamic tuning environment},
  author={Mart{\'\i}nez, Andrea and Sikora, Anna and C{\'e}sar, Eduardo and Sorribes, Joan},
  journal={Scientific Programming},
  volume={22},
  number={4},
  pages={261--271},
  year={2014},
  publisher={Hindawi Publishing Corporation}
}

% Reconfigurable Computing Benchmarks

@inproceedings{babb1997raw,
  title={The raw benchmark suite: Computation structures for general purpose computing},
  author={Babb, Jonathan and Frank, Matthew and Lee, Victor and Waingold, Elliot and Barua, Rajeev and Taylor, Michael and Kim, Jang and Devabhaktuni, Srikrishna and Agarwal, Anant},
  booktitle={Field-Programmable Custom Computing Machines, 1997. Proceedings., The 5th Annual IEEE Symposium on},
  pages={134--143},
  year={1997},
  organization={IEEE}
}
@inproceedings{kumar2000benchmark,
  title={A benchmark suite for evaluating configurable computing systems—status, reflections, and future directions},
  author={Kumar, S and Pires, Luiz and Ponnuswamy, Subburajan and Nanavati, C and Golusky, J and Vojta, M and Wadi, S and Pandalai, D and Spaanenberg, H},
  booktitle={Proceedings of the 2000 ACM/SIGDA eighth international symposium on Field programmable gate arrays},
  pages={126--134},
  year={2000},
  organization={ACM}
}
@inproceedings{chang2010ercbench,
  title={ERCBench: An open-source benchmark suite for embedded and reconfigurable computing},
  author={Chang, Daniel W and Jenkins, Christipher D and Garcia, Philip C and Gilani, Syed Z and Aguilera, Paula and Nagarajan, Aishwarya and Anderson, Michael J and Kenny, Matthew A and Bauer, Sean M and Schulte, Michael J and others},
  booktitle={Field Programmable Logic and Applications (FPL), 2010 International Conference on},
  pages={408--413},
  year={2010},
  organization={IEEE}
}

% High Level Synthesis on FPGAs

@inproceedings{loo2002handel,
  title={Handel-C for rapid prototyping of VLSI coprocessors for real time systems},
  author={Loo, SM and Wells, B Earl and Freije, N and Kulick, J},
  booktitle={System Theory, 2002. Proceedings of the Thirty-Fourth Southeastern Symposium on},
  pages={6--10},
  year={2002},
  organization={IEEE}
}
@inproceedings{antola2007novel,
  title={A novel hardware/software codesign methodology based on dynamic reconfiguration with Impulse C and CoDeveloper},
  author={Antola, Anna and Santambrogio, Marco Domenico and Fracassi, Marco and Gotti, Pamela and Sandionigi, Chiara},
  booktitle={Programmable Logic, 2007. SPL'07. 2007 3rd Southern Conference on},
  pages={221--224},
  year={2007},
  organization={IEEE}
}
@inproceedings{kindratenko2007mitrion,
  title={Mitrion-C application development on SGI Altix 350/RC100},
  author={Kindratenko, Volodymyr V and Brunner, Robert J and Myers, Adam D},
  booktitle={Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on},
  pages={239--250},
  year={2007},
  organization={IEEE}
}
@inproceedings{caulfield2016cloud,
  title={A cloud-scale acceleration architecture},
  author={Caulfield, Adrian M and Chung, Eric S and Putnam, Andrew and Angepat, Hari and Fowers, Jeremy and Haselman, Michael and Heil, Stephen and Humphrey, Matt and Kaur, Puneet and Kim, Joo-Young and others},
  booktitle={Microarchitecture (MICRO), 2016 49th Annual IEEE/ACM International Symposium on},
  pages={1--13},
  year={2016},
  organization={IEEE}
}
@article{luu2014vtr,
  title={VTR 7.0: Next generation architecture and CAD system for FPGAs},
  author={Luu, Jason and Goeders, Jeffrey and Wainberg, Michael and Somerville, Andrew and Yu, Thien and Nasartschuk, Konstantin and Nasr, Miad and Wang, Sen and Liu, Tim and Ahmed, Nooruddin and others},
  journal={ACM Transactions on Reconfigurable Technology and Systems (TRETS)},
  volume={7},
  number={2},
  pages={6},
  year={2014},
  publisher={ACM}
}
@article{coussy2009introduction,
  title={An introduction to high-level synthesis},
  author={Coussy, Philippe and Gajski, Daniel D and Meredith, Michael and Takach, Andres},
  journal={IEEE Design \& Test of Computers},
  volume={26},
  number={4},
  pages={8--17},
  year={2009},
  publisher={IEEE}
}
@inproceedings{nabi2016fast,
  title={A Fast and Accurate Cost Model for FPGA Design Space Exploration in HPC Applications},
  author={Nabi, Syed Waqar and Vanderbauwhede, Wim},
  booktitle={Parallel and Distributed Processing Symposium Workshops, 2016 IEEE International},
  pages={114--123},
  year={2016},
  organization={IEEE}
}
@article{singh2011implementing,
  title={Implementing {FPGA} design with the {OpenCL} standard},
  author={Singh, Deshanand},
  journal={Altera whitepaper},
  year={2011}
}
@article{feist2012vivado,
  title={Vivado design suite},
  author={Feist, Tom},
  journal={White Paper},
  volume={5},
  year={2012}
}
@inproceedings{villarreal2010designing,
  title={Designing modular hardware accelerators in C with ROCCC 2.0},
  author={Villarreal, Jason and Park, Adrian and Najjar, Walid and Halstead, Robert},
  booktitle={Field-Programmable Custom Computing Machines (FCCM), 2010 18th IEEE Annual International Symposium on},
  pages={127--134},
  year={2010},
  organization={IEEE}
}
@inproceedings{coussy2010gaut,
  title={GAUT a free and open source high-level synthesis tool},
  author={Coussy, Philippe and Lhairech-Lebreton, Ghizlane and Heller, Dominique and Martin, Eric},
  booktitle={IEEE DATE},
  year={2010}
}
@inproceedings{hadjis2012impact,
  title={Impact of FPGA architecture on resource sharing in high-level synthesis},
  author={Hadjis, Stefan and Canis, Andrew and Anderson, Jason H and Choi, Jongsok and Nam, Kevin and Brown, Stephen and Czajkowski, Tomasz},
  booktitle={Proceedings of the ACM/SIGDA international symposium on Field Programmable Gate Arrays},
  pages={111--114},
  year={2012},
  organization={ACM}
}
@inproceedings{liu2016efficient,
  title={Efficient and reliable High-Level Synthesis Design Space Explorer for FPGAs},
  author={Liu, Dong and Schafer, Benjamin Carrion},
  booktitle={Field Programmable Logic and Applications (FPL), 2016 26th International Conference on},
  pages={1--8},
  year={2016},
  organization={EPFL}
}
@inproceedings{chen2012invited,
  title={Invited paper: Using {OpenCL} to evaluate the efficiency of {CPUs}, {GPUs} and {FPGAs} for information filtering},
  author={Chen, Doris and Singh, Deshanand},
  booktitle={22nd International Conference on Field Programmable Logic and Applications (FPL)},
  pages={5--12},
  year={2012},
  organization={IEEE}
}
@article{karras2014high,
  title={High-Level Synthesis Case Study: Implementation of a Memcached Server},
  author={Karras, Kimon and Blott, Michaela and Vissers, Kees},
  journal={arXiv preprint arXiv:1408.5387},
  year={2014}
}
@inproceedings{segal2014high,
  title={High level programming framework for FPGAs in the data center},
  author={Segal, Oren and Margala, Martin and Chalamalasetti, Sai Rahul and Wright, Matthew},
  booktitle={Field Programmable Logic and Applications (FPL), 2014 24th International Conference on},
  pages={1--4},
  year={2014},
  organization={IEEE}
}
@article{segal2014highlevel,
  title={High Level Programming for Heterogeneous Architectures},
  author={Segal, Oren and Margala, Martin and Chalamalasetti, Sai Rahul and Wright, Mitch},
  journal={arXiv preprint arXiv:1408.4964},
  year={2014}
}
@phdthesis{canis2015legup,
  title={LegUp: Open-Source High-Level Synthesis Research Framework},
  author={Canis, Andrew Christopher},
  year={2015},
  school={University of Toronto}
}
@inproceedings{huang2013effect,
  title={The effect of compiler optimizations on high-level synthesis for FPGAs},
  author={Huang, Qijing and Lian, Ruolong and Canis, Andrew and Choi, Jongsok and Xi, Ryan and Brown, Shannon and Anderson, Jon},
  booktitle={Field-Programmable Custom Computing Machines (FCCM), 2013 IEEE 21st Annual International Symposium on},
  pages={89--96},
  year={2013},
  organization={IEEE}
}
@article{huang2015effect,
  title={The effect of compiler optimizations on high-level synthesis-generated hardware},
  author={Huang, Qijing and Lian, Ruolong and Canis, Andrew and Choi, Jongsok and Xi, Ryan and Calagar, Nazanin and Brown, Stephen and Anderson, Jason},
  journal={ACM Transactions on Reconfigurable Technology and Systems (TRETS)},
  volume={8},
  number={3},
  pages={14},
  year={2015},
  publisher={ACM}
}
@article{canis2013legup,
  title={LegUp: An open-source high-level synthesis tool for FPGA-based processor/accelerator systems},
  author={Canis, Andrew and Choi, Jongsok and Aldham, Mark and Zhang, Victor and Kammoona, Ahmed and Czajkowski, Tomasz and Brown, Stephen D and Anderson, Jason H},
  journal={ACM Transactions on Embedded Computing Systems (TECS)},
  volume={13},
  number={2},
  pages={24},
  year={2013},
  publisher={ACM}
}
@inproceedings{canis2011legup,
  title={LegUp: high-level synthesis for FPGA-based processor/accelerator systems},
  author={Canis, Andrew and Choi, Jongsok and Aldham, Mark and Zhang, Victor and Kammoona, Ahmed and Anderson, Jason H and Brown, Stephen and Czajkowski, Tomasz},
  booktitle={Proceedings of the 19th ACM/SIGDA international symposium on Field programmable gate arrays},
  pages={33--36},
  year={2011},
  organization={ACM}
}
@article{nane2016survey,
  author={R. Nane and V. M. Sima and C. Pilato and J. Choi and B. Fort and A. Canis and Y. T. Chen and H. Hsiao and S. Brown and F. Ferrandi and J. Anderson and K. Bertels},
  journal={IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems},
  title={A Survey and Evaluation of FPGA High-Level Synthesis Tools},
  year={2016},
  volume={PP},
  number={99},
  pages={1-1},
}
@inproceedings{krommydas2014characterization,
  title={On the characterization of OpenCL dwarfs on fixed and reconfigurable platforms},
  author={Krommydas, Konstantinos and Feng, Wu-chun and Owaida, Muhsen and Antonopoulos, Christos D and Bellas, Nikolaos},
  booktitle={Application-specific Systems, Architectures and Processors (ASAP), 2014 IEEE 25th International Conference on},
  pages={153--160},
  year={2014},
  organization={IEEE}
}
@inproceedings{owaida2011synthesis,
  title={Synthesis of platform architectures from OpenCL programs},
  author={Owaida, Muhsen and Bellas, Nikolaos and Daloukas, Konstantis and Antonopoulos, Christos D},
  booktitle={Field-Programmable Custom Computing Machines (FCCM), 2011 IEEE 19th Annual International Symposium on},
  pages={186--193},
  year={2011},
  organization={IEEE}
}
@book{coussy2010high,
  title={High-level synthesis},
  author={Coussy, Philippe and Morawiec, Adam},
  volume={1},
  year={2010},
  publisher={Springer}
}
@article{borkar2011future,
  title={The future of microprocessors},
  author={Borkar, Shekhar and Chien, Andrew A},
  journal={Communications of the ACM},
  volume={54},
  number={5},
  pages={67--77},
  year={2011},
  publisher={ACM}
}
@inproceedings{pilato2011design,
  title={A design methodology to implement memory accesses in high-level synthesis},
  author={Pilato, Christian and Ferrandi, Fabrizio and Sciuto, Donatella},
  booktitle={Hardware/Software Codesign and System Synthesis (CODES+ ISSS), 2011 Proceedings of the 9th International Conference on},
  pages={49--58},
  year={2011},
  organization={IEEE}
}
@inproceedings{pilato2013bambu,
  title={Bambu: A modular framework for the high level synthesis of memory-intensive applications},
  author={Pilato, Christian and Ferrandi, Fabrizio},
  booktitle={Field Programmable Logic and Applications (FPL), 2013 23rd International Conference on},
  pages={1--4},
  year={2013},
  organization={IEEE}
}
@inproceedings{lotfi2016grater,
  title={GRATER: An Approximation Workflow for Exploiting Data-Level Parallelism in FPGA Acceleration},
  author={Lotfi, Atieh and Rahimi, Abbas and Yazdanbakhsh, Amir and Esmaeilzadeh, Hadi and Gupta, Rajesh K},
  booktitle={2016},
  year={Design Automation and Test in Europe (DATE), 2016 19th}
}
@article{hara2009proposal,
  title={Proposal and quantitative analysis of the CHStone benchmark program suite for practical C-based high-level synthesis},
  author={Hara, Yuko and Tomiyama, Hiroyuki and Honda, Shinya and Takada, Hiroaki},
  journal={Journal of Information Processing},
  volume={17},
  pages={242--254},
  year={2009},
  publisher={Information Processing Society of Japan}
}
@inproceedings{hara2008chstone,
  title={Chstone: A benchmark program suite for practical c-based high-level synthesis},
  author={Hara, Yuko and Tomiyama, Hiroyuki and Honda, Shinya and Takada, Hiroaki and Ishii, Katsuya},
  booktitle={Circuits and Systems, 2008. ISCAS 2008. IEEE International Symposium on},
  pages={1192--1195},
  year={2008},
  organization={IEEE}
}

% Input Adaptation

@inproceedings{liu2009cross,
  title={A cross-input adaptive framework for GPU program optimizations},
  author={Liu, Yixun and Zhang, Eddy Z and Shen, Xipeng},
  booktitle={Parallel \& Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on},
  pages={1--10},
  year={2009},
  organization={IEEE}
}

% Teaching / Education

@inproceedings{coblenz2015course,
  title={A course-based usability analysis of Cilk Plus and OpenMP},
  author={Coblenz, Michael and Seacord, Robert and Myers, Brad and Sunshine, Joshua and Aldrich, Jonathan},
  booktitle={Visual Languages and Human-Centric Computing (VL/HCC), 2015 IEEE Symposium on},
  pages={245--249},
  year={2015},
  organization={IEEE}
}
@inproceedings{maarek2017development,
  title={Development of a Web Platform for Code Peer-Testing},
  author={Maarek, Manuel and McGregor, Leon},
  booktitle={PLATEAU 2017},
  year={2017},
  organization={ACM}
}
@article{guo2014python,
  title={Python is now the most popular introductory teaching language at top us universities},
  author={Guo, Philip},
  journal={BLOG@ CACM, July},
  pages={47},
  year={2014}
}
@inproceedings{ranum2006successful,
  title={Successful approaches to teaching introductory computer science courses with python},
  author={Ranum, David and Miller, Bradley and Zelle, John and Guzdial, Mark},
  booktitle={ACM SIGCSE Bulletin},
  volume={38},
  number={1},
  pages={396--397},
  year={2006},
  organization={ACM}
}
@inproceedings{fangohr2004comparison,
  title={A comparison of C, MATLAB, and Python as teaching languages in engineering},
  author={Fangohr, Hans},
  booktitle={International Conference on Computational Science},
  pages={1210--1217},
  year={2004},
  organization={Springer}
}

% Computer Architecture


@inproceedings{chen2014dadiannao,
  title={Dadiannao: A machine-learning supercomputer},
  author={Chen, Yunji and Luo, Tao and Liu, Shaoli and Zhang, Shijin and He, Liqiang and Wang, Jia and Li, Ling and Chen, Tianshi and Xu, Zhiwei and Sun, Ninghui and others},
  booktitle={Proceedings of the 47th Annual IEEE/ACM International Symposium on Microarchitecture},
  pages={609--622},
  year={2014},
  organization={IEEE Computer Society}
}
@inproceedings{chi2016prime,
  title={PRIME: A novel processing-in-memory architecture for neural network computation in reram-based main memory},
  author={Chi, Ping and Li, Shuangchen and Xu, Cong and Zhang, Tao and Zhao, Jishen and Liu, Yongpan and Wang, Yu and Xie, Yuan},
  booktitle={Proceedings of the 43rd International Symposium on Computer Architecture},
  pages={27--39},
  year={2016},
  organization={IEEE Press}
}
@inproceedings{hu2016dot,
  title={Dot-product engine for neuromorphic computing: programming 1T1M crossbar to accelerate matrix-vector multiplication},
  author={Hu, Miao and Strachan, John Paul and Li, Zhiyong and Grafals, Emmanuelle M and Davila, Noraica and Graves, Catherine and Lam, Sity and Ge, Ning and Yang, Jianhua Joshua and Williams, R Stanley},
  booktitle={Design Automation Conference (DAC), 2016 53nd ACM/EDAC/IEEE},
  pages={1--6},
  year={2016},
  organization={IEEE}
}
@article{steinbuch1961lernmatrix,
  title={Die lernmatrix},
  author={Steinbuch, Karl},
  journal={Biological Cybernetics},
  volume={1},
  number={1},
  pages={36--45},
  year={1961},
  publisher={Springer}
}
@article{likharev2011crossnets,
  title={CrossNets: Neuromorphic hybrid CMOS/nanoelectronic networks},
  author={Likharev, Konstantin K},
  journal={Science of Advanced Materials},
  volume={3},
  number={3},
  pages={322--331},
  year={2011},
  publisher={American Scientific Publishers}
}
@article{prezioso2015training,
  title={Training and operation of an integrated neuromorphic network based on metal-oxide memristors},
  author={Prezioso, Mirko and Merrikh-Bayat, Farnood and Hoskins, BD and Adam, GC and Likharev, Konstantin K and Strukov, Dmitri B},
  journal={Nature},
  volume={521},
  number={7550},
  pages={61--64},
  year={2015},
  publisher={Nature Research}
}
@article{george2016programmable,
  title={A programmable and configurable mixed-mode FPAA SoC},
  author={George, Suma and Kim, Sihwan and Shah, Sahil and Hasler, Jennifer and Collins, Michelle and Adil, Farhan and Wunderlich, Richard and Nease, Stephen and Ramakrishnan, Shubha},
  journal={IEEE Transactions on Very Large Scale Integration (VLSI) Systems},
  volume={24},
  number={6},
  pages={2253--2261},
  year={2016},
  publisher={IEEE}
}
@inproceedings{shafiee2016isaac,
  title={ISAAC: A convolutional neural network accelerator with in-situ analog arithmetic in crossbars},
  author={Shafiee, Ali and Nag, Anirban and Muralimanohar, Naveen and Balasubramonian, Rajeev and Strachan, John Paul and Hu, Miao and Williams, R Stanley and Srikumar, Vivek},
  booktitle={Proceedings of the 43rd International Symposium on Computer Architecture},
  pages={14--26},
  year={2016},
  organization={IEEE Press}
}
@inproceedings{laplante2016rethinking,
  title={Rethinking operating systems for rebooted computing},
  author={Laplante, Phil and Milojicic, Dejan},
  booktitle={Rebooting Computing (ICRC), IEEE International Conference on},
  pages={1--8},
  year={2016},
  organization={IEEE}
}
@article{goldstine1946electronic,
  title={The electronic numerical integrator and computer (ENIAC)},
  author={Goldstine, Herman H and Goldstine, Adele},
  journal={Mathematical Tables and Other Aids to Computation},
  volume={2},
  number={15},
  pages={97--110},
  year={1946},
  publisher={JSTOR}
}
@article{kung1984supercomputing,
  author={Kung, Sun-Yuan},
  journal={Proceedings of the IEEE},
  title={On supercomputing with systolic/wavefront array processors},
  year={1984},
  volume={72},
  number={7},
  pages={867--884}
}
@book{iannucci1988toward,
  title={Toward a dataflow/von Neumann hybrid architecture},
  author={Iannucci, Robert A},
  volume={16},
  number={2},
  year={1988},
  publisher={IEEE Computer Society Press}
}
@inproceedings{so2006improving,
  title={Improving usability of FPGA-based reconfigurable computers through operating system support},
  author={So, Hayden Kwok-Hay and Brodersen, Robert W},
  booktitle={Field Programmable Logic and Applications, 2006. FPL'06. International Conference on},
  pages={1--6},
  year={2006},
  organization={IEEE}
}

% Neural Networks

@article{courbariaux2014low,
  title={Low precision arithmetic for deep learning},
  author={Courbariaux, Matthieu and Bengio, Yoshua and David, J},
  journal={CoRR, abs/1412.7024},
  volume={4},
  year={2014}
}
@inproceedings{rastegari2016xnor,
  title={Xnor-net: Imagenet classification using binary convolutional neural networks},
  author={Rastegari, Mohammad and Ordonez, Vicente and Redmon, Joseph and Farhadi, Ali},
  booktitle={European Conference on Computer Vision},
  pages={525--542},
  year={2016},
  organization={Springer}
}
@article{zhou2016dorefa,
  title={DoReFa-Net: Training low bitwidth convolutional neural networks with low bitwidth gradients},
  author={Zhou, Shuchang and Wu, Yuxin and Ni, Zekun and Zhou, Xinyu and Wen, He and Zou, Yuheng},
  journal={arXiv preprint arXiv:1606.06160},
  year={2016}
}

% Design of Experiments

@book{fedorov1972theory,
  title={Theory of optimal experiments},
  author={Fedorov, Valerii Vadimovich},
  year={1972},
  publisher={Elsevier}
}
@article{atkinson1989construction,
  title={The construction of exact D-optimum experimental designs with application to blocking response surface designs},
  author={Atkinson, Anthony C and Donev, Alexander N},
  journal={Biometrika},
  volume={76},
  number={3},
  pages={515--526},
  year={1989},
  publisher={Oxford University Press}
}
@inproceedings{behzad2014improving,
  title={Improving parallel I/O autotuning with performance modeling},
  author={Behzad, Babak and Byna, Surendra and Wild, Stefan M and Prabhat, Mr and Snir, Marc},
  booktitle={Proceedings of the 23rd international symposium on High-performance parallel and distributed computing},
  pages={253--256},
  year={2014},
  organization={ACM}
}
@inproceedings{tuzov2017dependability,
  title={Dependability-Aware Design Space Exploration for Optimal Synthesis Parameters Tuning},
  author={Tuzov, Ilya and de Andr{\'e}s, David and Ruiz, Juan-Carlos},
  booktitle={Dependable Systems and Networks (DSN), 2017 47th Annual IEEE/IFIP International Conference on},
  pages={121--132},
  year={2017},
  organization={IEEE}
}
@inproceedings{suda2009bayesian,
  title={Bayesian Experimental Design and Random Sampling for Online Automatic Tuning},
  author={Suda, Reiji},
  year={2009},
  booktitle={The Fourth International Workshop on Automatic Performance Tuning}
}
@techreport{ulrike2018algorithm,
  title={An Algorithm for Generating Good Mixed Level Factorial Designs},
  author={Grömping, Ulrike and Fontana, Roberto},
  year={2018},
  institution={Beuth University of Applied Sciences, Berlin}
}
@book{box2005statistics,
  title={Statistics for experimenters: design, innovation, and discovery},
  author={Box, George EP and Hunter, J Stuart and Hunter, William Gordon},
  volume={2},
  year={2005},
  publisher={Wiley-Interscience New York}
}
@book{bukh1992art,
  title={The art of computer systems performance analysis, techniques for experimental design, measurement, simulation and modeling},
  author={Bukh, Per Nikolaj D},
  year={1992},
  publisher={JSTOR}
}
@book{montgomery2017design,
  title={Design and analysis of experiments},
  author={Montgomery, Douglas C},
  year={2017},
  publisher={John wiley \& sons}
}
@article{john1975optimality,
  title={D-optimality for regression designs: a review},
  author={John, RC St and Draper, Norman R},
  journal={Technometrics},
  volume={17},
  number={1},
  pages={15--23},
  year={1975},
  publisher={Taylor \& Francis}
}
@techreport{webb1967results,
  title={Results on non-orthogonal incomplete factorial designs},
  author={Webb, Steve R},
  year={1967},
  institution={ROCKETDYNE CANOGA PARK CA}
}
@article{mitchell1974computer,
  title={Computer construction of “D-optimal” first-order designs},
  author={Mitchell, Toby J},
  journal={Technometrics},
  volume={16},
  number={2},
  pages={211--220},
  year={1974},
  publisher={Taylor \& Francis}
}
@article{mitchell1974algorithm,
  title={An algorithm for the construction of “D-optimal” experimental designs},
  author={Mitchell, Toby J},
  journal={Technometrics},
  volume={16},
  number={2},
  pages={203--210},
  year={1974},
  publisher={Taylor \& Francis}
}
@article{cook1980comparison,
  title={A comparison of algorithms for constructing exact D-optimal designs},
  author={Cook, R Dennis and Nachtrheim, Christopher J},
  journal={Technometrics},
  volume={22},
  number={3},
  pages={315--324},
  year={1980},
  publisher={Taylor \& Francis Group}
}
@article{plackett1946design,
  title={The design of optimum multifactorial experiments},
  author={Plackett, Robin L and Burman, J Peter},
  journal={Biometrika},
  volume={33},
  number={4},
  pages={305--325},
  year={1946},
  publisher={JSTOR}
}
@book{fisher1937design,
  title={The design of experiments},
  author={Fisher, Ronald Aylmer},
  year={1937},
  publisher={Oliver And Boyd; Edinburgh; London}
}
@article{addelman1961some,
  title={Some main-effect plans and orthogonal arrays of strength two},
  author={Addelman, Sidney and Kempthorne, Oscar},
  journal={The Annals of Mathematical Statistics},
  pages={1167--1176},
  year={1961},
  publisher={JSTOR}
}
@article{georgiou2014supersaturated,
  title={Supersaturated designs: A review of their construction and analysis},
  author={Georgiou, Stelios D},
  journal={Journal of Statistical Planning and Inference},
  volume={144},
  pages={92--109},
  year={2014},
  publisher={Elsevier}
}
@article{fontana2013algebraic,
  title={Algebraic generation of minimum size orthogonal fractional factorial designs: an approach based on integer linear programming},
  author={Fontana, Roberto},
  journal={Computational Statistics},
  volume={28},
  number={1},
  pages={241--253},
  year={2013},
  publisher={Springer}
}
@article{fontana2017generalized,
  title={Generalized minimum aberration mixed-level orthogonal arrays: A general approach based on sequential integer quadratically constrained quadratic programming},
  author={Fontana, Roberto},
  journal={Communications in Statistics-Theory and Methods},
  volume={46},
  number={9},
  pages={4275--4284},
  year={2017},
  publisher={Taylor \& Francis}
}
@article{tuzov2018tuning,
  title={Tuning synthesis flags to optimize implementation goals: Performance and robustness of the LEON3 processor as a case study},
  author={Tuzov, Ilya and de Andr{\'e}s, David and Ruiz, Juan-Carlos},
  journal={Journal of Parallel and Distributed Computing},
  volume={112},
  pages={84--96},
  year={2018},
  publisher={Elsevier}
}
@article{fontana2013minimum,
  title={Minimum-size mixed-level orthogonal fractional factorial designs generation: A SAS-based algorithm},
  author={Fontana, Roberto and Sampo, Sabrina},
  journal={Journal of Statistical Software},
  volume={53},
  number={10},
  pages={1--18},
  year={2013},
  publisher={American Statistical Association}
}

% Compiler Infrastructures

@inproceedings{chris2004llvm,
author    = {Chris Lattner and Vikram Adve},
title     = "{LLVM: A Compilation Framework for Lifelong Program Analysis \& Transformation}",
booktitle = "{Proceedings of the 2004 International Symposium on Code Generation and Optimization (CGO'04)}",
address   = {Palo Alto, California},
month     = {Mar},
year      = {2004}
}

% Self

@inproceedings{bruel2015autotuning,
  author={Bruel, Pedro and Amarís, Marcos and Goldman, Alfredo},
  title={Autotuning {GPU} Compiler Parameters Using {OpenTuner}},
  booktitle={Proceedings of the WSCAD (Simpósio em Sistemas Computacionais de Alto Desempenho), 2015}
}
@article {bruel2017autotuning,
  author = {Bruel, Pedro and Amarís, Marcos and Goldman, Alfredo},
  title = {Autotuning CUDA compiler parameters for heterogeneous applications using the OpenTuner framework},
  journal = {Concurrency and Computation: Practice and Experience},
  issn = {1532-0634},
  doi = {10.1002/cpe.3973},
  pages = {e3973--n/a},
  keywords = {autotuning, GPUs, compilers, CUDA, OpenTuner},
  year = {2017},
}
@inproceedings{bruel2014protocol,
  title={A Protocol for creating Multiagent Systems in Ensemble with Pure Data.},
  author={Bruel, Pedro and Queiroz, Marcelo},
  booktitle={ICMC},
  year={2014}
}
@inproceedings{bruel2017generalize,
  title={Generalize or Die: Operating Systems Support for Memristor-based Accelerators},
  author={Bruel, Pedro and Chalamalasetti, Sai Rahul and Dalton, Chris and El Hajj, Izzat and Goldman, Alfredo and Graves, Catherine and Hwu, Wen-mei and Laplante, Phil and Milojicic, Dejan and Ndu, Geoffrey and Strachan, John Paul},
  booktitle={IEEE International Conference on Rebooted Computing (ICRC)},
  organization={IEEE},
  year={2017}
}
@inproceedings{bruel2017autotuninghls,
  title={Autotuning High-Level Synthesis for {FPGAs} Using {OpenTuner} and {LegUp}},
  author={Bruel, Pedro and Goldman, Alfredo and Chalamalasetti, Sai Rahul and Milojicic, Dejan},
  booktitle={International Conference on Reconfigurable Computing and FPGAs (ReConFig)},
  year={2017}
}
@inproceedings{bruel2017openmp,
  title={OpenMP or Pthreads: Which is Better for Beginners?},
  author={Bruel, Pedro and Meirelles, Paulo and Cobe, Raphael and Goldman, Alfredo},
  booktitle={Workshop on Evaluation and Usability of Programming Languages and Tools (PLATEAU)},
  year={2017}
}
@inproceedings{goncalves2016openmp,
  title={Openmp is not as easy as it appears},
  author={Gon{\c{c}}alves, Rog{\'e}rio and Amaris, Marcos and Okada, Thiago and Bruel, Pedro and Goldman, Alfredo},
  booktitle={System Sciences (HICSS), 2016 49th Hawaii International Conference on},
  pages={5742--5751},
  year={2016},
  organization={IEEE}
}

% Journal of Open Research Software

@article{crick2017reproducibility,
  title={Reproducibility in Research: Systems, Infrastructure, Culture},
  author={Crick, T and Hall, Benjamin Andrew and Ishtiaq, S},
  journal={Journal of Open Research Software},
  year={2017},
  publisher={Ubiquity Press}
}
@article{liu2017openopticalflow,
  title={OpenOpticalFlow: An Open Source Program for Extraction of Velocity Fields from Flow Visualization Images},
  author={Liu, Tianshu},
  journal={Journal of Open Research Software},
  volume={5},
  number={1},
  year={2017},
  publisher={Ubiquity Press}
}
@article{stodden2013best,
  title={Best practices for computational science: Software infrastructure and environments for reproducible and extensible research},
  author={Stodden, Victoria and Miguez, Sheila},
  publisher={Ubiquity Press},
  year={2017},
  year={2013}
}
@article{rackauckas2017differentialequations,
  title={DifferentialEquations. jl--A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia},
  author={Rackauckas, Christopher and Nie, Qing},
  journal={Journal of Open Research Software},
  volume={5},
  number={1},
  year={2017},
  publisher={Ubiquity Press}
}
@article{jacobsen2016generalized,
  title={Generalized Sampling in Julia},
  author={Jacobsen, Robert Dahl and Nielsen, Morten and Rasmussen, Morten Grud},
  journal={Journal of Open Research Software},
  year={2016},
  publisher={Ubiquity Press}
}

% Misc

@misc{bruel2018ccgrid19,
  title = {Git repository with all scripts and data},
  howpublished = {\url{https://github.com/phrb/ccgrid19}},
  author={Pedro Bruel},
  note = {Accessed: 2018-10-14}
}
@inproceedings{beazley2010understanding,
  title={Understanding the python gil},
  author={Beazley, David},
  booktitle={PyCON Python Conference. Atlanta, Georgia},
  year={2010}
}
@article{douady1984etude,
  title={Etude dynamique des polyn{\^o}mes complexes},
  author={Douady, Adrien and Hubbard, John Hamal and Lavaurs, P},
  year={1984},
  publisher={Universit{\'e} de Paris-Sud, D{\'e}p. de Math{\'e}matique}
}

% Neuromorphic Computing

@inproceedings{chung2016simplifying,
  title={Simplifying deep neural networks for neuromorphic architectures},
  author={Chung, Jaeyong and Shin, Taehwan},
  booktitle={Design Automation Conference (DAC), 2016 53nd ACM/EDAC/IEEE},
  pages={1--6},
  year={2016},
  organization={IEEE}
}

% R language and packages

@Manual{team2018rlanguage,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2018},
  url = {https://www.R-project.org/},
}
@Manual{wheeler2014algdesign,
  title = {AlgDesign: Algorithmic Experimental Design},
  author = {Bob Wheeler},
  year = {2014},
  note = {{R} package version 1.1-7.3},
  url = {https://CRAN.R-project.org/package=AlgDesign},
}
@Article{gromping2014frf2,
  title = {{R} Package {FrF2} for Creating and Analyzing Fractional Factorial 2-Level Designs},
  author = {Ulrike Grömping},
  journal = {Journal of Statistical Software},
  year = {2014},
  volume = {56},
  number = {1},
  pages = {1--56},
  url = {http://www.jstatsoft.org/v56/i01/},
}
@Book{fox2011car,
  title = {An {R} Companion to Applied Regression},
  edition = {Second},
  author = {John Fox and Sanford Weisberg},
  year = {2011},
  publisher = {Sage},
  address = {Thousand Oaks {CA}},
  url = {http://socserv.socsci.mcmaster.ca/jfox/Books/Companion},
}
@Manual{carnell2018lhs,
  title = {lhs: Latin Hypercube Samples},
  author = {Rob Carnell},
  year = {2018},
  note = {{R} package version 0.16},
  url = {https://CRAN.R-project.org/package=lhs},
}

% Grid5000
@incollection{balouek2013adding,
   title = {Adding Virtualization Capabilities to the {Grid'5000} Testbed},
   author = {Balouek, Daniel and Carpen Amarie, Alexandra and Charrier, Ghislain and Desprez, Fr{\'e}d{\'e}ric and Jeannot, Emmanuel and Jeanvoine, Emmanuel and L{\`e}bre, Adrien and Margery, David and Niclausse, Nicolas and Nussbaum, Lucas and Richard, Olivier and P{\'e}rez, Christian and Quesnel, Flavien and Rohr, Cyril and Sarzyniec, Luc},
   booktitle = {Cloud Computing and Services Science},
   publisher = {Springer International Publishing},
   pages = {3-20},
   volume = {367},
   editor = {Ivanov, Ivan I. and van Sinderen, Marten and Leymann, Frank and Shan, Tony },
   series = {Communications in Computer and Information Science },
   isbn = {978-3-319-04518-4 },
   doi = {10.1007/978-3-319-04519-1\_1 },
   year = {2013},
}