Create environment

[MirandaBiel]

Hi, I'm trying to create an environment with the command conda env create --file https://raw.githubusercontent.com/phuselab/pyVHR/pyVHR_CPU/pyVHR_CPU_env.yml, but I believe the pyVHR_CPU_env.yml specs are out of date, anyone can you help me? the first error is that there is no mediapipe version 0.8.8.1

I've already tried both the GPU version and the CPU version, both give errors

[Pablo-Arias]

Same problem here, did you find any resolution?

[MirandaBiel]

I gave up and started doing my own methods 😅

[gauthier-th]

Just update the version of mediapipe to 0.8.11 in a new pyVHR_env.yml file on your computer, and then rerun the command with the local file :

conda env create --file ./pyVHR_env.yml

pyVHR_env.yml content:

name: pyvhr
channels:
  - pytorch
  - rapidsai
  - anaconda
  - conda-forge
  - defaults
dependencies:
  - cudatoolkit=11.3
  - cusignal=21.08.00
  - hdf5=1.10.6
  - pip=21.3.1
  - pytables=3.6.1
  - pytorch=1.10.0
  - pytorch-mutex=1.0
  - python=3.9.7
  - torchaudio=0.10.0
  - torchvision=0.11.1
  - pip:
    - asposestorage==1.0.2
    - autorank==1.1.1
    - biosppy==0.7.3
    - ipython==7.28.0
    - ipywidgets==7.6.5
    - lmfit==1.0.3
    - mediapipe==0.8.11
    - plotly==5.3.1
    - pybdf==0.2.5
    - PySimpleGUI==4.53.0
    - scikit_posthocs==0.6.7
    - scikit-image==0.18.3
    - tqdm==4.62.3
    - tensorflow==2.5.0

edit: maybe could someone do a PR to fix this?

[batonogov]

I created a PR.

As a temporary solution you can use my fork.