From 7b11cbe59dcc9d84619310a19e224c06d972498b Mon Sep 17 00:00:00 2001 From: Peter Selby Date: Thu, 7 Mar 2024 11:43:30 -0500 Subject: [PATCH] GLIS paragraph --- content/03.05.analytics.md | 4 ++-- content/03.07.data-portals.md | 7 +++++-- content/metadata.yaml | 31 ++++++++++++++++++++----------- 3 files changed, 27 insertions(+), 15 deletions(-) diff --git a/content/03.05.analytics.md b/content/03.05.analytics.md index 60325ed..98cba71 100644 --- a/content/03.05.analytics.md +++ b/content/03.05.analytics.md @@ -23,5 +23,5 @@ Mr. Bean is an analytics and visualization tool. Mr. Bean has a data import tool #### G-Crunch - -G-Crunch is a new general analysis pipeline tool, meant for automated, production level, analysis tasks. Part of that automation relies on BrAPI to access data. +G-Crunch is an upcoming user-facing analysis tool that attempts to fill the space of simple, user driven analytics requests, with a generic user interface and the ability to swap out data sources and analysis tools. G-Crunch hopes to streamline repeatable, debuggable simple analytic requests and results. +G-Crunch, as a tool, couldn't feasibly exist without BrAPI. The support of BrAPI interfaces allows G-Crunch to use one unified request method, and adapt to the user's (BrAPI-compliant) existing network of tools, which lowers the barrier to entry for adoption. diff --git a/content/03.07.data-portals.md b/content/03.07.data-portals.md index 2fac2c4..0d1d385 100644 --- a/content/03.07.data-portals.md +++ b/content/03.07.data-portals.md @@ -21,5 +21,8 @@ HortControl, developed by Phenospex, is a data repository. HortControl has a BrA #### GLIS - -GLIS is a service for creating DOIs for agricultural purposes. It also holds basic germplasm information about each accession when a DOI is created for one. GLIS is BrAPI compatible, allowing external searches on the large GLIS database. +The Global Information System (GLIS) on Plant Genetic Resources for Food and Agriculture (PGRFA) of the International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) is a web-based global entry point for users and third-party systems to access information and knowledge on scientific, technical and environmental matters to strengthen PGRFA conservation, management and utilization activities. The system and its portal also enable recipients of PGRFA to make available all non-confidential information on germplasm according to the provisions of the Treaty and facilitates access to the results of their research and development. + +Thanks to the adoption of Digital Object Identifiers (DOIs) to PGRFA ex situ and in situ based on the Multi-Crop Passport Descriptors (MCPD), the Portal provides access to 1,7 million PGRFA in collections conserved worldwide. Of these, over 1.5 million are accessible for research, training and plant breeding in the food and agriculture domain. + +The Scientific Advisory Committee of the International Treaty and the Governing Body have repeatedly welcomed efforts on interoperability among germplasm information systems. In this context, the GLIS Portal adopted the Breeding API (BrAPI v1) in 2022. Integrating the BrAPI among the GLIS content negotiators facilitates queries and the exchange of content for data management in plant breeding. The Portal also offers other protocols (XML, DarwinCore, JSON and JSON-LD) to increase data and metadata connectivity.In the near future, depending on the availability of resources, upgrading to BrAPI v2 is planned. diff --git a/content/metadata.yaml b/content/metadata.yaml index 7208e27..bece453 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -26,7 +26,6 @@ authors: email: twrife@clemson.edu affiliations: - Clemson University - funders: [] corresponding: false - name: Khaled Al-Shamaa initials: KA @@ -34,7 +33,6 @@ authors: email: khaled.alshamaa@gmail.com affiliations: - ICARDA - funders: [] corresponding: false - name: Isabelle Alic initials: IA @@ -54,7 +52,6 @@ authors: email: sebastian.raubach@hutton.ac.uk affiliations: - The James Hutton Institute - funders: [] corresponding: false - name: Paul Shaw initials: PDS @@ -63,7 +60,6 @@ authors: email: paul.shaw@hutton.ac.uk affiliations: - The James Hutton Institute - funders: [] corresponding: false - name: Iain Milne initials: IM @@ -72,7 +68,6 @@ authors: email: iain.milne@hutton.ac.uk affiliations: - The James Hutton Institute - funders: [] corresponding: false - name: Cyril Pommier initials: CP @@ -93,7 +88,6 @@ authors: email: becky.smith@hutton.ac.uk affiliations: - The James Hutton Institute - funders: [] corresponding: false - name: Chaney Courtney github: chaneylc @@ -101,7 +95,6 @@ authors: email: ccourtn@clemson.edu affiliations: - Clemson University - funders: [] corresponding: false - name: Zachary Miller initials: ZM @@ -110,7 +103,6 @@ authors: orcid: 0000-0002-5454-4527 affiliations: - Cornell University - funders: [] corresponding: false - name: Terry Casstevens initials: TC @@ -119,7 +111,6 @@ authors: orcid: 0000-0001-7602-0487 affiliations: - Cornell University - funders: [] corresponding: false - name: Sook Jung initials: SJ @@ -127,7 +118,6 @@ authors: orcid: 0000-0003-3968-2769 affiliations: - Department of Horticulture, Washington State University - funders: [] corresponding: false - name: Taein Lee initials: TL @@ -136,7 +126,26 @@ authors: orcid: 0000-0002-2000-2586 affiliations: - Department of Horticulture, Washington State University - funders: [] + corresponding: false + - name: Josh "Big Data" Lamos-Sweeney + initials: JDLS + github: jlamossweeney + email: jdl232@cornell.edu + affiliations: + - Cornell University + corresponding: false + - name: Francisco López + initials: FL + email: francisco.lopez@fao.org + affiliations: + - International Treaty on Plant Genetic Resources for Food and Agriculture, FAO + corresponding: false + - name: Marco Marsella + initials: MM + email: marco.marsella@fao.org + orcid: 0000-0003-0334-8785 + affiliations: + - International Treaty on Plant Genetic Resources for Food and Agriculture, FAO corresponding: false