From ad26f674b4a50e9518d43366c44815b867b5d14f Mon Sep 17 00:00:00 2001 From: Peter Selby Date: Fri, 7 Jun 2024 09:11:43 -0400 Subject: [PATCH] fix authors list --- content/03.05.04.SCT.md | 2 +- content/metadata.yaml | 24 ++++++++++++------------ 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/content/03.05.04.SCT.md b/content/03.05.04.SCT.md index 02c19cd..575e6d1 100644 --- a/content/03.05.04.SCT.md +++ b/content/03.05.04.SCT.md @@ -1,6 +1,6 @@ #### SCT -The [Sugarcane Crossing Tool (SCT)](https://github.com/USDA-ARS-GBRU/SugarcaneCrossingTool) is a lightweight RShiny dashboard application designed to receive, process, and visualize data from a linked BreedBase [@doi:10.1093/g3journal/jkac078] instance. This application is being developed collaboratively with members of the [Sugarcane Integrated Breeding System](https://www.amscl.org/sugarcane-integrated-breeding-system/), who have advocated for an application that assists them in designing crosses based on queried information from a list of available accessions. By leveraging existing community resources, the team has been able to develop a simple, BrAPI-enabled, application without possessing extensive programming knowledge or experience. The SCT is presented as an inspiration for similarly positioned scientists to consider developing custom applications for specific tasks. The modularized, open source code is available in a [GitHub repository](https://github.com/USDA-ARS-GBRU/SugarcaneCrossingTool) for community reference and reuse. +The [Sugarcane Crossing Tool (SCT)](https://keocorak.shinyapps.io/STract/) is a lightweight RShiny dashboard application designed to receive, process, and visualize data from a linked BreedBase [@doi:10.1093/g3journal/jkac078] instance. This application is being developed collaboratively with members of the [Sugarcane Integrated Breeding System](https://www.amscl.org/sugarcane-integrated-breeding-system/), who have advocated for an application that assists them in designing crosses based on queried information from a list of available accessions. By leveraging existing community resources, the team has been able to develop a simple, BrAPI-enabled, application without possessing extensive programming knowledge or experience. The SCT is presented as an inspiration for similarly positioned scientists to consider developing custom applications for specific tasks. The modularized, open source code is available in a [GitHub repository](https://github.com/USDA-ARS-GBRU/SugarcaneCrossingTool) for community reference and reuse. The crossing tool utilizes a modified version of the [BrAPI-R](https://github.com/CIP-RIU/brapi) library to access a compliant database, and it employs standard R/JavaScript packages to aggregate and visualize data. Modules within the application allow breeders to query the database (through BrAPI) for information relevant to their decision-making process. This includes the number and sex of flowering accessions, deep pedigree and relatedness information, summarized trial data, and the prior frequency and success of potential cross combinations. Future versions of this tool will provide additional decision support (e.g. ranked potential crosses) to enhance the accuracy and efficiency of crossing. diff --git a/content/metadata.yaml b/content/metadata.yaml index 75b7cb1..bdb9d09 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -94,18 +94,18 @@ authors: orcid: 0000-0001-7602-0487 affiliations: - Cornell University + - name: Keo Corak + github: keocorak + initials: KC + email: keo.corak@usda.gov + affiliations: + - USDA-ARS Genomics and Bioinformatics Research Unit - name: Chaney Courtney github: chaneylc initials: CC email: ccourtn@clemson.edu affiliations: - Clemson University - - name: Keo Corak - github: keocorak - initials: KC - email: keo.corak@usda.gov - affiliations: - - USDA-ARS Genomics and Bioinformatics Research Unit - name: Mariano Crimi initials: MC email: m.crimi@integratedbreeding.net @@ -279,6 +279,12 @@ authors: affiliations: - The James Hutton Institute - name: Lukas Mueller + - name: Moses Nderitu + github: jndmose + email: m.nderitu@seqart.net + initials: MN + affiliations: + - SEQART AFRICA - name: Cyril Pommier initials: CP github: cpommier @@ -369,9 +375,3 @@ authors: affiliations: - Leibniz Institute of Plant Genetics and Crop Plant Research - name: Shawn Yarnes - - name: Moses Nderitu - github: jndmose - email: m.nderitu@seqart.net - initials: MN - affiliations: - - SEQART AFRICA