From e4f471a9fc1dabd18d76d7ece01204804004f039 Mon Sep 17 00:00:00 2001 From: Jenna Hershberger Date: Mon, 15 Jul 2024 18:00:46 -0400 Subject: [PATCH] BIMS edits JH --- content/03.04.01.BIMS.md | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/content/03.04.01.BIMS.md b/content/03.04.01.BIMS.md index 4172423..d18cf03 100644 --- a/content/03.04.01.BIMS.md +++ b/content/03.04.01.BIMS.md @@ -1,6 +1,9 @@ #### BIMS -[BIMS](https://wwww.breedwithbims.org) (Breeding Information Management System) [@doi:10.1093/database/baab054] is a free, secure, and online breeding management system which allows breeders to store, manage, archive, and analyze their private breeding program data. BIMS enables individual breeders to have complete control of their own breeding data along with access to tools such as data import/export, data analysis, and data archiving for their germplasm, phenotype, genotype, and image data. BIMS is currently implemented in five community databases, the Genome Database for Rosaceae [@doi:10.1093/nar/gky1000], CottonGEN [@doi:10.3390/plants10122805], the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium. BIMS in these five community databases enables individual breeders to import publicly available data so that they can utilize public data in their breeding program. BIMS is also implemented in the public database [breedwithbims.org](https://wwww.breedwithbims.org) that any crop breeder can use. + [The Breeding Information Management System (BIMS)](https://wwww.breedwithbims.org) [@doi:10.1093/database/baab054] is a free, secure, online breeding management system which allows breeders to store, manage, archive, and analyze their private breeding program data. + BIMS enables individual breeders to have complete control of their own breeding data along with access to tools such as data import,export, analysis, and archiving for their germplasm, phenotype, genotype, and image data. + BIMS is currently implemented in five community databases, the Genome Database for Rosaceae [@doi:10.1093/nar/gky1000], CottonGEN [@doi:10.3390/plants10122805], the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium, where it enables individual breeders to import publicly available data. + BIMS is also implemented in the public database [breedwithbims.org](https://wwww.breedwithbims.org) that any crop breeder can use. -Right now, BIMS primarily utilizes BrAPI to connect with the Field Book Android App [@doi:10.2135/cropsci2013.08.0579], enabling seamless data transfer between BIMS and the app. Data transfer through BrAPI between BIMS and other resources such as BreedBase[@doi:10.1093/g3journal/jkac078], GIGWA[@doi:10.1093/gigascience/giz051], and Breeder Genomics Hub is on the way. Hopefully, the BIMS development team can easily reuse some of the solved use cases and workflows created by others in the BrAPI community. +BIMS primarily utilizes BrAPI to connect with Field Book [@doi:10.2135/cropsci2013.08.0579], enabling seamless data transfer between data collection and subsequent managament in BIMS. Data transfer through BrAPI between BIMS and other resources such as Breedbase [@doi:10.1093/g3journal/jkac078], GIGWA [@doi:10.1093/gigascience/giz051], and Breeder Genomics Hub is under development.