MANIFEST

diya.pl
INSTALL
LICENSE
Makefile.PL
MANIFEST
README
docs/diya.html
docs/conf.dtd
conf/genome-annotator-for-ncbi.xml
examples/download-and-format.conf
examples/download-genome.pl
examples/download-and-annotate.conf
examples/blastpCDS.conf
examples/rpsblastCDS.conf
examples/rnammer.conf
examples/convert2fasta.pl
examples/extractCDS.pl
examples/formatdb.sh
examples/rename-and-formatdb.pl
examples/genome-annotator-fasta.conf
examples/genome-annotator.conf
lib/diya.pm
lib/diya/template.pm
lib/diya/MARC/GenbankConvertUtil.pm
lib/diya/MARC/blastpCDS.pm
lib/diya/MARC/rpsblastCDS.pm
lib/diya/MARC/glimmer3.pm
lib/diya/MARC/CRT.pm
lib/diya/MARC/phobos.pm
lib/diya/MARC/cmsearch.pm
lib/diya/MARC/rnammer.pm
lib/diya/MARC/tRNAscanSE.pm
lib/diya/MARC/blastall.pm
scripts/gbconvert.pl
scripts/diya-assemble_pseudocontig.pl
scripts/diya-genbank2gff.pl
scripts/diya-genbank2gff3.pl
t/01_diya.t
t/02_tRNAscan-sge.t
t/03_blast.t
t/04_formatdb.t 
t/data/blastpCDS.conf
t/data/example-db.fa
t/data/mini-yberc0001.gbk
t/data/contig1.fa
t/data/little-buchnera.fa
t/data/little-buchnera.gbk
t/data/BA000003-nt.gbk
t/data/test.conf
t/data/tRNAscan.conf
t/data/blast.conf
t/data/blast2.conf
t/data/diya.pl
t/data/diya-blast.pl
t/data/diya-blast2.pl
t/data/J01673.gb
t/data/J01673-CDS.fa
t/lib/Test/More.pm
t/lib/Test/Exception.pm
t/lib/Sub/Uplevel.pm