cip_test.txt

Organism	Strain	Gene	Flank (upstram/downstream)	Primer sequence		
Staphylococcus aureus		GyrA	100	GGCGGATCCCATATGGCTGAATTACCTCA	GGCGGAATTCGACGGCTCTCTTTCATTAC	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	100	AATGAACAAGGTATGACACC	TACGCGCTTCAGTATAACGC	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	100	AAGGAGGAAGAATTCATGGCTGAA	AGACTGACGGCTCTCTTTCATTAC	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	100	TGCGATGAGTGTTATCGTTG	AGTCATACGCGCTTCAGTAT	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	100	TCGTGCATTGCCAGATGTTCG	TCGAGCAGGTAAGACTGACGG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrB	100	CAGCGTTAGATGTAGCAAGC	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	100	AAGTCGCACGTACAGTGGTT	CTGTACCAAATGCTGTGATC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	100	GTACAGTGGTTGAAAAAGGT	CCAAATGCTGTGATCATTTG	"Asp437, Arg458"
Staphylococcus aureus		GrlB	100	CGATTAAAGCACAACAAGCAAG	CATCAGTCATAATAATTACTC	"Glu422, Asp432"
Staphylococcus aureus		GrlB	100	CGTAAAGACACTTTGCTATC	TAAAGTCAGTACCAACGCCT	"Glu422, Asp433"
Staphylococcus aureus		fusA		CTCGTAATATCGGTATCATGGCTC	CAGCATAGTGATCGAAGTACATAG	"P404, P406, L461, P478"
Staphylococcus aureus		fusA		GAAGACCCAACATTCCATGCAC	TGGAATGTATTCACGAGGAACTAC	"P404, P406, L461, P478"
Staphylococcus aureus		GrlA		GGCCGGATCCCATATGAGTGAAATAATTCAAGATT	GGCCGAATTCTAATAATTAACTGTTTACGTGCC	"Ser80, Glu84"
Staphylococcus aureus		GrlA		ACTTGAAGATGTTTTAGGTGAT	TTAGGAAATCTTGATGGCAA	"Ser80, Glu84"
Staphylococcus aureus		NorA	500	TTCACCAAGCCATCAAAAAG	CTTGCCTTTCTCCAGCAATA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	TCGTCTTAGCGTTCGGTTTA	TCCAGTAACCATCGGCAATA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	TGTTAAGTCTTGGTCATCTGCA	AGCAGCAACAAGTAACCCTAAA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	CGCGGATCCCATCACATGCACCAATGCCG	CGCGGATCCCTGTTTATTCATATGCTCAC	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	TTCACCAAGCCATCAAAAAG	GCACATCAAATAACGCACCT	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	ATATTCAGTTGTTGTCTTAATAT	GCACATCAAATAACGCACCT	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	500	ATATTCAGTTATTGTATTAGTGC	GCACATCAAATAACGCACCT	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		GyrA	0	CATTGCCAGATGTTCGTGAC	GCGCTTCAGTATAACGCATTG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	0	CATTGCCAGATGTTCGTGAC	GCTTCAGTATAACGCATTGCTG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	0	CCAGATGTTCGTGACGGTTT	GCGCTTCAGTATAACGCATTG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	0	CCAGATGTTCGTGACGGTTT	GCTTCAGTATAACGCATTGCTG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrA	0	CATTGCCAGATGTTCGTGAC	TCATACGCGCTTCAGTATAACG	"Ser84, Glu88, Ser85"
Staphylococcus aureus		GyrB	0	CGTCGTAAATCAGCGTTAGATG	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	0	GCGCGTGAAGTAACACGTC	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	0	AGCGCGTGAAGTAACACGTC	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	0	AAAAAGCGCGTGAAGTAACA	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GyrB	0	CACGTCGTAAATCAGCGTTAGA	CCGATTCCTGTACCAAATGC	"Asp437, Arg458"
Staphylococcus aureus		GrlB	0	ACAACAAGCAAGGGAAGCTG	TTCCAGACGTGCTTTCTCTG	"Glu422, Asp432"
Staphylococcus aureus		GrlB	0	AGCACAACAAGCAAGGGAAG	TTCCAGACGTGCTTTCTCTG	"Glu422, Asp432"
Staphylococcus aureus		GrlB	0	CAAGGGAAGCTGCACGTAA	TTCCAGACGTGCTTTCTCTG	"Glu422, Asp432"
Staphylococcus aureus		GrlB	0	AGCACAACAAGCAAGGGAAG	TTCCAGACGTGCTTTCTCTGT	"Glu422, Asp432"
Staphylococcus aureus		GrlB	0	CAAGGGAAGCTGCACGTAA	TTCCAGACGTGCTTTCTCTGT	"Glu422, Asp432"
Staphylococcus aureus		GrlA	0	ATTGCCAGATGTTCGTGATG	AGCTTCAGTGTAACGCATTG	"Ser80, Glu84"
Staphylococcus aureus		GrlA	0	CATTGCCAGATGTTCGTGAT	AGCTTCAGTGTAACGCATTG	"Ser80, Glu84"
Staphylococcus aureus		GrlA	0	GCCAGATGTTCGTGATGGTT	AGCTTCAGTGTAACGCATTG	"Ser80, Glu84"
Staphylococcus aureus		GrlA	0	AACCCGTACAACGTCGTATTTT	AGCTTCAGTGTAACGCATTG	"Ser80, Glu84"
Staphylococcus aureus		GrlA	0	ATTGCCAGATGTTCGTGATG	TTAGCTTCAGTGTAACGCATTG	"Ser80, Glu84"
Staphylococcus aureus		FusA	0	CGGCTGCGGTAGGTCTTA	ATGAAACCATTGGAGCACCT	"P404, P406, L461, P478"
Staphylococcus aureus		FusA	0	CGGCTGCGGTAGGTCTTA	CCATTGGAGCACCTACGTTA	"P404, P406, L461, P478"
Staphylococcus aureus		FusA	0	CGGCTGCGGTAGGTCTTA	CCATTGGAGCACCTACGTTAC	"P404, P406, L461, P478"
Staphylococcus aureus		FusA	0	CGGCTGCGGTAGGTCTTA	ACCATTGGAGCACCTACGTTA	"P404, P406, L461, P478"
Staphylococcus aureus		FusA	0	GGTGAGAAAAATGACATTATCTTGG	ATGAAACCATTGGAGCACCT	"P404, P406, L461, P478"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	CACCCGTAATAGCAATCGAAA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	0	TTGGTGGATTTATGGCAGAAG	CACCCGTAATAGCAATCGAAA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	CAAATATACCGCCACCCGTA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	0	TTGGTGGATTTATGGCAGAAG	CAAATATACCGCCACCCGTA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	AAATATACCGCCACCCGTAA	"87, 93, 183, 186, 277, 297"
Staphylococcus aureus		NorA	0	GTTGCTGCTTTTGCGTTATC	TCGCTGACATGTAGCCAAAG	"87, 93"
Staphylococcus aureus		NorA	0	AGTTGCTGCTTTTGCGTTATC	TCGCTGACATGTAGCCAAAG	"87, 93"
Staphylococcus aureus		NorA	0	TGCTGCTTTTGCGTTATCTC	CGCTGACATGTAGCCAAAGTT	"87, 93"
Staphylococcus aureus		NorA	0	TTGCTGCTTTTGCGTTATCT	CGCTGACATGTAGCCAAAGT	"87, 93"
Staphylococcus aureus		NorA	0	GTTGCTGCTTTTGCGTTATC	CGCTGACATGTAGCCAAAGT	"87, 93"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	CACCCGTAATAGCAATCGAAA	"183, 186"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	CAAATATACCGCCACCCGTA	"183, 186"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	AAATATACCGCCACCCGTAA	"183, 186"
Staphylococcus aureus		NorA	0	TTTAGGACCAGGGATTGGTG	CACCCGTAATAGCAATCGAA	"183, 186"
Staphylococcus aureus		NorA	0	ACCAGGGATTGGTGGATTTA	CACCCGTAATAGCAATCGAAA	"183, 186"
Staphylococcus aureus		NorA	0	TACGGGTGGCGGTATATTTG	AAAGCCTTGCCTTTCTCCAG	"277, 297"
Staphylococcus aureus		NorA	0	CGGTATATTTGGGGCACTTTT	AAAGCCTTGCCTTTCTCCAG	"277, 297"
Staphylococcus aureus		NorA	0	GCGGTATATTTGGGGCACTT	AAAGCCTTGCCTTTCTCCAG	"277, 297"
Staphylococcus aureus		NorA	0	CGGTATATTTGGGGCACTTT	AAAGCCTTGCCTTTCTCCAG	"277, 297"
Staphylococcus aureus		NorA	0	TACGGGTGGCGGTATATTTG	AAAGCCTTGCCTTTCTCCA	"277, 297"