diff --git a/.changeset/rude-wombats-beg.md b/.changeset/rude-wombats-beg.md new file mode 100644 index 0000000..c112403 --- /dev/null +++ b/.changeset/rude-wombats-beg.md @@ -0,0 +1,5 @@ +--- +'@platforma-open/milaboratories.mixcr-clonotyping.workflow': patch +--- + +Fix alphabet annotation diff --git a/workflow/src/pfconv_params.lib.tengo b/workflow/src/pfconv_params.lib.tengo index f94e522..5468ccc 100644 --- a/workflow/src/pfconv_params.lib.tengo +++ b/workflow/src/pfconv_params.lib.tengo @@ -422,7 +422,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR1", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR1 aa", @@ -438,7 +438,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR2", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR2 aa", @@ -454,7 +454,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR3", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR3 aa", @@ -470,7 +470,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR4", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR4 aa", @@ -486,7 +486,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR1", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR1 aa", @@ -502,7 +502,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR2", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR2 aa", @@ -518,7 +518,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR3", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR3 aa", @@ -534,7 +534,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "FR1", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "FR1 imputed nt", @@ -550,7 +550,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "FR2", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "FR2 imputed nt", @@ -566,7 +566,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "FR3", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "FR3 imputed nt", @@ -582,7 +582,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "FR4", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "FR4 imputed nt", @@ -598,7 +598,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "CDR1", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "CDR1 imputed nt", @@ -614,7 +614,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "CDR2", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "CDR2 imputed nt", @@ -630,7 +630,7 @@ getColumns := func(blockId) { "valueType": "String", "domain": { "pl7.app/vdj/feature": "CDR3", - "alphabet": "nucleotide" + "pl7.app/alphabet": "nucleotide" }, "annotations": { "pl7.app/label": "CDR3 imputed nt", @@ -646,7 +646,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR1", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR1 imputed aa", @@ -662,7 +662,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR2", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR2 imputed aa", @@ -678,7 +678,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR3", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR3 imputed aa", @@ -694,7 +694,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "FR4", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "FR4 imputed aa", @@ -710,7 +710,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR1", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR1 imputed aa", @@ -726,7 +726,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR2", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR2 imputed aa", @@ -742,7 +742,7 @@ getColumns := func(blockId) { "name": "pl7.app/vdj/sequence", "domain": { "pl7.app/vdj/feature": "CDR3", - "alphabet": "aminoacid" + "pl7.app/alphabet": "aminoacid" }, "annotations": { "pl7.app/label": "CDR3 imputed aa",