diff --git a/.changeset/quick-bears-care.md b/.changeset/quick-bears-care.md new file mode 100644 index 0000000..a499d7d --- /dev/null +++ b/.changeset/quick-bears-care.md @@ -0,0 +1,9 @@ +--- +'@platforma-open/milaboratories.mixcr-clonotyping.workflow': patch +'@platforma-open/milaboratories.mixcr-clonotyping': patch +'@platforma-open/milaboratories.mixcr-clonotyping.model': patch +'@platforma-open/milaboratories.mixcr-clonotyping.test': patch +'@platforma-open/milaboratories.mixcr-clonotyping.ui': patch +--- + +SDK upgrade & secrets API usage in workflow diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 124dc97..f631168 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -28,35 +28,35 @@ catalogs: specifier: ^1.5.6 version: 1.5.6 '@milaboratories/uikit': - specifier: ^1.2.5 - version: 1.2.5 + specifier: ^1.2.7 + version: 1.2.7 '@milaboratory/mixcr': specifier: 4.7.0-70-develop version: 4.7.0-70-develop '@platforma-open/milaboratories.samples-and-data': - specifier: ^1.3.0 - version: 1.3.0 + specifier: ^1.3.2 + version: 1.3.2 '@platforma-open/milaboratories.samples-and-data.model': specifier: ^1.3.0 version: 1.3.0 '@platforma-sdk/block-tools': - specifier: ^2.3.1 - version: 2.3.1 + specifier: ^2.3.4 + version: 2.3.4 '@platforma-sdk/model': - specifier: ^1.2.27 - version: 1.2.27 + specifier: ^1.2.28 + version: 1.2.28 '@platforma-sdk/tengo-builder': specifier: ^1.14.11 version: 1.14.11 '@platforma-sdk/test': - specifier: ^1.5.20 - version: 1.5.23 + specifier: ^1.5.24 + version: 1.5.24 '@platforma-sdk/ui-vue': - specifier: ^1.3.8 - version: 1.3.8 + specifier: ^1.3.11 + version: 1.3.11 '@platforma-sdk/workflow-tengo': - specifier: ^1.2.8 - version: 1.2.8 + specifier: ^1.2.9 + version: 1.2.9 '@vitejs/plugin-vue': specifier: ^5.1.4 version: 5.1.4 @@ -103,27 +103,27 @@ importers: version: link:workflow '@platforma-sdk/model': specifier: 'catalog:' - version: 1.2.27 + version: 1.2.28 devDependencies: '@changesets/cli': specifier: 'catalog:' version: 2.27.8 '@platforma-sdk/block-tools': specifier: 'catalog:' - version: 2.3.1 + version: 2.3.4 model: dependencies: '@platforma-sdk/model': specifier: 'catalog:' - version: 1.2.27 + version: 1.2.28 zod: specifier: 'catalog:' version: 3.23.8 devDependencies: '@platforma-sdk/block-tools': specifier: 'catalog:' - version: 2.3.1 + version: 2.3.4 tsup: specifier: 'catalog:' version: 8.1.2(postcss@8.4.47)(typescript@5.5.4)(yaml@2.5.1) @@ -138,7 +138,7 @@ importers: dependencies: '@platforma-open/milaboratories.samples-and-data': specifier: 'catalog:' - version: 1.3.0(typescript@5.5.4) + version: 1.3.2(typescript@5.5.4) '@platforma-open/milaboratories.samples-and-data.model': specifier: 'catalog:' version: 1.3.0 @@ -148,7 +148,7 @@ importers: devDependencies: '@platforma-sdk/test': specifier: 'catalog:' - version: 1.5.23(@types/node@22.0.0) + version: 1.5.24(@types/node@22.0.0) typescript: specifier: 'catalog:' version: 5.5.4 @@ -175,16 +175,16 @@ importers: version: 1.6.2 '@milaboratories/uikit': specifier: 'catalog:' - version: 1.2.5(typescript@5.5.4) + version: 1.2.7(typescript@5.5.4) '@platforma-open/milaboratories.mixcr-clonotyping.model': specifier: workspace:* version: link:../model '@platforma-sdk/model': specifier: 'catalog:' - version: 1.2.27 + version: 1.2.28 '@platforma-sdk/ui-vue': specifier: 'catalog:' - version: 1.3.8(typescript@5.5.4) + version: 1.3.11(typescript@5.5.4) '@vueuse/core': specifier: 'catalog:' version: 11.1.0(vue@3.5.10(typescript@5.5.4)) @@ -224,10 +224,10 @@ importers: version: 1.14.11 '@platforma-sdk/test': specifier: 'catalog:' - version: 1.5.23(@types/node@22.0.0) + version: 1.5.24(@types/node@22.0.0) '@platforma-sdk/workflow-tengo': specifier: 'catalog:' - version: 1.2.8 + version: 1.2.9 typescript: specifier: 'catalog:' version: 5.5.4 @@ -893,15 +893,12 @@ packages: '@milaboratories/pl-drivers@1.2.22': resolution: {integrity: sha512-JP7NnXHvgQMmL9ChE3g/wi/MbWKDG3XotXOk0+Ylau3ZBEGonfStTGbi7f6i1Hk71+IE6L2jfqetAtHoNxMN9Q==} - '@milaboratories/pl-middle-layer@1.10.28': - resolution: {integrity: sha512-0lwQivwiGBJveciUp6j73hMjGwG/qwx0rRnxKJ8mHoy/WK1LEooooRRH+a5M5QSnh54xRvwj/bpYWjAobRSCRA==} + '@milaboratories/pl-middle-layer@1.10.29': + resolution: {integrity: sha512-7PZhxyFa5RPcapO+JvDocsBus8+zVfnOSfGsf/KGlYL1FTaMr+EdbFtc3x6d3aLVvKS0W0rGE84DSUuD6s5Bkw==} '@milaboratories/pl-model-common@1.3.13': resolution: {integrity: sha512-BTeh254CBUQH5dkbjxnwwtmhsjLKBOMKLb8Be4K77k/Mvl6vNJmth14bGIPceS6DXHt41HshgJ9mSr5GSL+5qQ==} - '@milaboratories/pl-model-middle-layer@1.4.1': - resolution: {integrity: sha512-rP7s3fhTVN+7J0OZTbBiXbhckiPeRqbmDJxogJd9I5J2xDBHb1cTV+NkZMCr+P3SElkWXLOxI4iSEPgonCN4Mg==} - '@milaboratories/pl-model-middle-layer@1.4.2': resolution: {integrity: sha512-c4dt25HuhenPcA1r6oOE15jYlQtTcxZRxK/xDVVFQdAkTeFTqWcIzqGFJznbE27vn6LHHuPW3hnVAUGFLU2mcQ==} @@ -925,11 +922,8 @@ packages: '@milaboratories/ts-helpers@1.0.27': resolution: {integrity: sha512-MXO8Nj0qTelFKi1E4/R0QDjHIJm8OG8+6DDZkQtgtuv+avLpw5j8Dh9h/6bMD/kbRHYy6LqU8MeFG4iDOQSq9g==} - '@milaboratories/uikit@1.2.4': - resolution: {integrity: sha512-A7U+4sLzvCoINiP9ayMQ9sVEIs/zD6BhgdtLTOTyra9FS/VW1wgbuGv5QOdaOVyfE9sffOsVzpIt69eprA9CaQ==} - - '@milaboratories/uikit@1.2.5': - resolution: {integrity: sha512-AjznJ9vWBz5Hvx/0C2+BoNGYUMUBWMk6sQfjlDXuTEIedxlfxQ087m2vTJWu2AymoxUkL4NfDpzc28jhWBLU+g==} + '@milaboratories/uikit@1.2.7': + resolution: {integrity: sha512-jdAfR2R6tpPz8/qSHLiuzU9/anXSW7wNdt8I/T2cJfn1lkUZkma0XzYUZ8jdACgbo1bmqDnhqfrMB/37eboXAg==} '@milaboratory/mixcr@4.7.0-70-develop': resolution: {integrity: sha512-C/GGIzrrow07uQnx7Pqr3z+kF9jDLFUOKfHjZMwWQBhe+tN+0SoVLSh+TRGXgfD7SnS8CinKs/xz7yAKWx6+Mw==, tarball: https://npm.pkg.github.com/download/@milaboratory/mixcr/4.7.0-70-develop/26e2a7be5d49630243d7e32ae44925e17e07db41} @@ -960,41 +954,37 @@ packages: '@platforma-open/milaboratories.samples-and-data.ui@1.6.0': resolution: {integrity: sha512-ibWWO7jipYdg+m91DncdyfRg16aRHm69GSYer+XWr656E4wcdYZbRtrL41o7pIRTcYdlL2chBUBC8+Wmq9WH2w==, tarball: https://npm.pkg.github.com/download/@platforma-open/milaboratories.samples-and-data.ui/1.6.0/2b0db6cbede466947f52b4f1c3fc24b5d1d89567} - 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'@platforma-sdk/block-tools@2.3.1': - resolution: {integrity: sha512-0HNBxOnjaakO9u1s35OFAUVFqvu5tUcne4O2km8sFq1r8AOKJFmqpFTk5rCe2k3S1Gabnfy/DRPfJ5rHsKtvsg==} - hasBin: true + '@platforma-open/milaboratories.samples-and-data@1.3.2': + resolution: {integrity: sha512-Cz3MXEcZL8KjLAKLENCn92qn7DM3TvPi0gPC5MruLbuuJ3iYbGk/Cr+GUceSVnS8E0fzAdTXOq0VhmimKaXASQ==, tarball: https://npm.pkg.github.com/download/@platforma-open/milaboratories.samples-and-data/1.3.2/ff857f0e406f1ec3849bede1bd6add292a49f98f} '@platforma-sdk/block-tools@2.3.4': resolution: {integrity: sha512-cIff6ERlFaHZ98Ojo59ZPYzK91Dck2AlBtYdb+YbAEaYLwv4toXaIs3AxTA21RIYoP8EuB0744o5c6XcTZ9h+A==} hasBin: true - '@platforma-sdk/model@1.2.26': - resolution: {integrity: sha512-9+VA8YAaifZFaq6ICJnSZ+4rT7zlbIBDWb1/V3SNqerAAQJUrH4ADrnRJLUy+HefEs6DVTSxn9plmBt7najlSw==} - '@platforma-sdk/model@1.2.27': resolution: {integrity: sha512-WXHQyyiR1u5DcjPB2gZVjmTx6+Vvl48SJjir4ccwawC0LpjGYiBpKw+uQoQOigJcFjrrP5YhBpcaR8PVJL69eA==} + '@platforma-sdk/model@1.2.28': + resolution: {integrity: sha512-NKalOFP+gjfwPodWW496c6g3kSQCy+wyhe64vqQItiV6dkbrFDOOtpKanOkfFFdXOUhoi+YpG+IeazvoUVgpkg==} + '@platforma-sdk/tengo-builder@1.14.11': resolution: {integrity: sha512-s6ikuVBtD2Tmfu05XLIWLR7Rva//zWl+T8xz9lbieGl26PdefldP8U3+CwxBZPshq/P414lNwV6Ioq/N7bmBsg==} hasBin: true - '@platforma-sdk/test@1.5.23': - resolution: {integrity: sha512-P9KHtXiSxamnfZP5psmSPJGxVQrjK7IypGacN5ZtzT0bfWEMoI1KMuWiGwYVVBCcT3jr7NKmamp0FHfWtmMmyg==} + '@platforma-sdk/test@1.5.24': + resolution: {integrity: sha512-LeFSo+TD0OUgQ4HgfdjbZmcCF5Dov7UsLwPO67FED+hoL8muLDPwV63za1NVl7gE/i/lqR/6rahVGkzPHBN6sA==} - '@platforma-sdk/ui-vue@1.3.7': - resolution: {integrity: sha512-W1NO8CwUvok01Kh1dhy1aWBXmQeIokMtiKXOOlIqkg9SVTBuJQ1fd/QITg7oO2uPkps84rRIrAXbjCUo8Qh3bw==} + '@platforma-sdk/ui-vue@1.3.10': + resolution: {integrity: sha512-YmYN7OihD5dQ+kZOe+keMqpnlxzgJnke96Tiidokj21C1l0KcKgZ0rfgwVm99OnqrbDTKK3CYoe9IajIW26+Mw==} - '@platforma-sdk/ui-vue@1.3.8': - resolution: {integrity: sha512-BvQLLj0P2i/KOE+mJHwc+E2KCbXwThD8szEqxFnO6bj7FpfVfFbrmQ1Xw/JIaZakAzuL44tmzxZh7XCZxW4gEQ==} + '@platforma-sdk/ui-vue@1.3.11': + resolution: {integrity: sha512-i30YxB+zdW5vY1V45GSnH9pZvkcNdHO/1e7psdLMwFRIx/glP0C2nGmFNTfK8bR4jTyQSd0q7/h+A+wZ0kgeZg==} - '@platforma-sdk/workflow-tengo@1.2.8': - resolution: {integrity: sha512-5dKpjT5o2U2shggssNPSUqguoYFFoDzayOO6rFC+tTUMopYkVA1loMLmNCaHQCB4IOt3hixCZRsxGpa4XQc5vA==} + '@platforma-sdk/workflow-tengo@1.2.9': + resolution: {integrity: sha512-UvPeqqouV9C9dmMJ4i4F+L5ZmTMA1gH4yqK5gNFKx+uaeUn/OmCYsvPsDuDMH6ZrP6w2I/RFJrijigReciiaww==} '@protobuf-ts/grpc-transport@2.9.4': resolution: {integrity: sha512-CgjTR3utmkMkkThpfgtOz9tNR9ZARbNoQYL7TCKqFU2sgAX0LgzAkwOx+sfgtUsZn9J08+yvn307nNJdYocLRA==} @@ -3938,7 +3928,7 @@ snapshots: transitivePeerDependencies: - supports-color - '@milaboratories/pl-middle-layer@1.10.28': + '@milaboratories/pl-middle-layer@1.10.29': dependencies: '@milaboratories/computable': 2.1.7 '@milaboratories/pframes-node': 1.5.6(@milaboratories/pl-model-common@1.3.13) @@ -3950,8 +3940,8 @@ snapshots: '@milaboratories/resolve-helper': 1.0.1 '@milaboratories/ts-helpers': 1.0.27 '@platforma-sdk/block-tools': 2.3.4 - '@platforma-sdk/model': 1.2.27 - '@platforma-sdk/workflow-tengo': 1.2.8 + '@platforma-sdk/model': 1.2.28 + '@platforma-sdk/workflow-tengo': 1.2.9 canonicalize: 2.0.0 denque: 2.1.0 quickjs-emscripten: 0.31.0 @@ -3968,12 +3958,6 @@ snapshots: dependencies: zod: 3.23.8 - '@milaboratories/pl-model-middle-layer@1.4.1': - dependencies: - '@milaboratories/pl-model-common': 1.3.13 - utility-types: 3.11.0 - zod: 3.23.8 - '@milaboratories/pl-model-middle-layer@1.4.2': dependencies: '@milaboratories/pl-model-common': 1.3.13 @@ -4006,13 +3990,7 @@ snapshots: dependencies: denque: 2.1.0 - '@milaboratories/uikit@1.2.4(typescript@5.5.4)': - dependencies: - vue: 3.5.10(typescript@5.5.4) - transitivePeerDependencies: - - typescript - - '@milaboratories/uikit@1.2.5(typescript@5.5.4)': + '@milaboratories/uikit@1.2.7(typescript@5.5.4)': dependencies: vue: 3.5.10(typescript@5.5.4) transitivePeerDependencies: @@ -4058,7 +4036,7 @@ snapshots: '@platforma-open/milaboratories.samples-and-data.model@1.3.0': dependencies: - '@platforma-sdk/model': 1.2.26 + '@platforma-sdk/model': 1.2.27 zod: 3.23.8 '@platforma-open/milaboratories.samples-and-data.ui@1.6.0(typescript@5.5.4)': @@ -4073,44 +4051,27 @@ snapshots: '@ag-grid-enterprise/range-selection': 32.2.1 '@ag-grid-enterprise/rich-select': 32.2.1 '@milaboratories/helpers': 1.6.2 - '@milaboratories/uikit': 1.2.4(typescript@5.5.4) + '@milaboratories/uikit': 1.2.7(typescript@5.5.4) '@platforma-open/milaboratories.samples-and-data.model': 1.3.0 - '@platforma-sdk/model': 1.2.26 - '@platforma-sdk/ui-vue': 1.3.7(typescript@5.5.4) + '@platforma-sdk/model': 1.2.27 + '@platforma-sdk/ui-vue': 1.3.10(typescript@5.5.4) utility-types: 3.11.0 vue: 3.5.10(typescript@5.5.4) zod: 3.23.8 transitivePeerDependencies: - typescript - '@platforma-open/milaboratories.samples-and-data.workflow@1.7.0': {} + '@platforma-open/milaboratories.samples-and-data.workflow@1.7.1': {} - '@platforma-open/milaboratories.samples-and-data@1.3.0(typescript@5.5.4)': + '@platforma-open/milaboratories.samples-and-data@1.3.2(typescript@5.5.4)': dependencies: '@platforma-open/milaboratories.samples-and-data.model': 1.3.0 '@platforma-open/milaboratories.samples-and-data.ui': 1.6.0(typescript@5.5.4) - '@platforma-open/milaboratories.samples-and-data.workflow': 1.7.0 - '@platforma-sdk/model': 1.2.26 + '@platforma-open/milaboratories.samples-and-data.workflow': 1.7.1 + '@platforma-sdk/model': 1.2.27 transitivePeerDependencies: - typescript - '@platforma-sdk/block-tools@2.3.1': - dependencies: - '@aws-sdk/client-s3': 3.658.1 - '@milaboratories/pl-model-middle-layer': 1.4.1 - '@milaboratories/resolve-helper': 1.0.1 - '@milaboratories/ts-helpers': 1.0.27 - '@milaboratories/ts-helpers-oclif': 1.1.5 - '@oclif/core': 4.0.23 - canonicalize: 2.0.0 - mime-types: 2.1.35 - tar: 7.4.3 - undici: 6.19.8 - yaml: 2.5.1 - zod: 3.23.8 - transitivePeerDependencies: - - aws-crt - '@platforma-sdk/block-tools@2.3.4': dependencies: '@aws-sdk/client-s3': 3.658.1 @@ -4128,13 +4089,13 @@ snapshots: transitivePeerDependencies: - aws-crt - '@platforma-sdk/model@1.2.26': + '@platforma-sdk/model@1.2.27': dependencies: '@milaboratories/pl-model-common': 1.3.13 utility-types: 3.11.0 zod: 3.23.8 - '@platforma-sdk/model@1.2.27': + '@platforma-sdk/model@1.2.28': dependencies: '@milaboratories/pl-model-common': 1.3.13 utility-types: 3.11.0 @@ -4147,14 +4108,14 @@ snapshots: canonicalize: 2.0.0 winston: 3.14.2 - '@platforma-sdk/test@1.5.23(@types/node@22.0.0)': + '@platforma-sdk/test@1.5.24(@types/node@22.0.0)': dependencies: '@milaboratories/computable': 2.1.7 '@milaboratories/pl-client': 2.4.15 - '@milaboratories/pl-middle-layer': 1.10.28 + '@milaboratories/pl-middle-layer': 1.10.29 '@milaboratories/pl-tree': 1.3.12 '@milaboratories/ts-helpers': 1.0.27 - '@platforma-sdk/model': 1.2.27 + '@platforma-sdk/model': 1.2.28 vitest: 2.1.1(@types/node@22.0.0) transitivePeerDependencies: - '@edge-runtime/vm' @@ -4175,23 +4136,23 @@ snapshots: - supports-color - terser - '@platforma-sdk/ui-vue@1.3.7(typescript@5.5.4)': + '@platforma-sdk/ui-vue@1.3.10(typescript@5.5.4)': dependencies: - '@milaboratories/uikit': 1.2.4(typescript@5.5.4) - '@platforma-sdk/model': 1.2.26 + '@milaboratories/uikit': 1.2.7(typescript@5.5.4) + '@platforma-sdk/model': 1.2.27 vue: 3.5.10(typescript@5.5.4) transitivePeerDependencies: - typescript - '@platforma-sdk/ui-vue@1.3.8(typescript@5.5.4)': + '@platforma-sdk/ui-vue@1.3.11(typescript@5.5.4)': dependencies: - '@milaboratories/uikit': 1.2.5(typescript@5.5.4) - '@platforma-sdk/model': 1.2.27 + '@milaboratories/uikit': 1.2.7(typescript@5.5.4) + '@platforma-sdk/model': 1.2.28 vue: 3.5.10(typescript@5.5.4) transitivePeerDependencies: - typescript - '@platforma-sdk/workflow-tengo@1.2.8': + '@platforma-sdk/workflow-tengo@1.2.9': dependencies: '@milaboratories/software-pframes-conv': 1.5.6 diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml index c7ad11f..68db91b 100644 --- a/pnpm-workspace.yaml +++ b/pnpm-workspace.yaml @@ -7,15 +7,15 @@ packages: catalog: '@platforma-sdk/tengo-builder': ^1.14.11 - '@platforma-sdk/block-tools': ^2.3.1 + '@platforma-sdk/block-tools': ^2.3.4 - '@platforma-sdk/model': ^1.2.27 - '@platforma-sdk/test': ^1.5.20 + '@platforma-sdk/model': ^1.2.28 + '@platforma-sdk/test': ^1.5.24 - '@platforma-sdk/workflow-tengo': ^1.2.8 + '@platforma-sdk/workflow-tengo': ^1.2.9 - '@milaboratories/uikit': ^1.2.5 - '@platforma-sdk/ui-vue': ^1.3.8 + '@milaboratories/uikit': ^1.2.7 + '@platforma-sdk/ui-vue': ^1.3.11 '@milaboratories/helpers': ^1.6.2 '@milaboratories/software-pframes-conv': ^1.5.6 @@ -45,5 +45,5 @@ catalog: # other blocks used in tests - '@platforma-open/milaboratories.samples-and-data': ^1.3.0 + '@platforma-open/milaboratories.samples-and-data': ^1.3.2 '@platforma-open/milaboratories.samples-and-data.model': ^1.3.0 diff --git a/workflow/src/get-preset.tpl.tengo b/workflow/src/get-preset.tpl.tengo index f009878..26787a7 100644 --- a/workflow/src/get-preset.tpl.tengo +++ b/workflow/src/get-preset.tpl.tengo @@ -26,6 +26,7 @@ self.body(func(inputs) { mixcrExportPresetCmdBuilder := exec.builder(). software(mixcrSw). printErrStreamToStdout(). + secret("MI_LICENSE", "MI_LICENSE"). arg("exportPreset"). arg("--preset-name"). arg(presetName) diff --git a/workflow/src/list-presets.tpl.tengo b/workflow/src/list-presets.tpl.tengo index ede43a8..1a06f67 100644 --- a/workflow/src/list-presets.tpl.tengo +++ b/workflow/src/list-presets.tpl.tengo @@ -13,6 +13,7 @@ mixcrSw := assets.importSoftware("@milaboratory/mixcr:main") self.body(func(inputs) { listPresets := exec.builder(). software(mixcrSw). + secret("MI_LICENSE", "MI_LICENSE"). arg("listPresetSpecificationsForUI"). arg("presets.json"). inUiQueue(). diff --git a/workflow/src/mixcr-analyze.tpl.tengo b/workflow/src/mixcr-analyze.tpl.tengo index 0ec53dc..104ea5e 100644 --- a/workflow/src/mixcr-analyze.tpl.tengo +++ b/workflow/src/mixcr-analyze.tpl.tengo @@ -55,6 +55,7 @@ self.body(func(inputs) { if inputDataMeta.keyLength == 1 { mixcrCmdBuilder := exec.builder(). printErrStreamToStdout(). + secret("MI_LICENSE", "MI_LICENSE"). env("MI_PROGRESS_PREFIX", progressPrefix). software(mixcrSw). arg("analyze")