Flatpak packages aren't updated if they need to be replaced

[git-f0x]

With the recent FreeCAD update, the names of the packages were changed, with the current packages being deprecated in favor of the new ones.
The Store doesn't update those packages, since it doesn't seem to handle the replace prompt in the CLI.

Info: runtime org.freecadweb.FreeCAD.Locale branch stable is end-of-life, in favor of org.freecad.FreeCAD.Locale branch stable
Replace? [Y/n]:

Info: app org.freecadweb.FreeCAD branch stable is end-of-life, in favor of org.freecad.FreeCAD branch stable
Replace? [Y/n]: