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popgenomics/popPhylABC
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Datasets from the popPhyl project: https://lc.cx/4Eid Converting fasta files into input for ABC analysis: popPhyl2ABC_v2.py This code depends on the C++ library libsequence by calling polydNdS to get synonymous positions. An incompatibility had been reported with version of libsequence >2.0 !!! https://github.com/molpopgen/analysis To compile mscalc, the calculator of statistics: gcc *.c -lm -o mscalc To compile msnsam, the coalescent simulator (Ross-Ibarra et al, 2008): ./clms The following programs have to be linked to your bin/ : mscalc priorgen.py msnsam popPhyl2ABC_v2.py polydNdS
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Scripts used for ABC analysis with homo- and heterogeneity in Migration rates or/and Effective population sizes
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