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environment.yml
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environment.yml
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name: cellrank
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alsa-lib=1.2.3=h516909a_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py37h5e8e339_1
- arpack=3.7.0=hdefa2d7_2
- attrs=21.4.0=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bleach=4.1.0=pyhd8ed1ab_0
- blosc=1.21.0=h9c3ff4c_0
- bottleneck=1.3.2=py37hb1e94ed_5
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2021.10.8=py37h89c1867_1
- cffi=1.15.0=py37h036bc23_0
- click=8.0.3=py37h89c1867_1
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.26=py37hcd2ae1e_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.5.1=py37hcd2ae1e_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- expat=2.4.3=h9c3ff4c_0
- flit-core=3.6.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.28.5=py37h5e8e339_0
- freetype=2.10.4=h0708190_1
- gettext=0.19.8.1=h73d1719_1008
- glpk=4.65=h9202a9a_1004
- gmp=6.2.1=h58526e2_0
- gst-plugins-base=1.18.5=hf529b03_3
- gstreamer=1.18.5=h9f60fe5_3
- h5py=3.6.0=nompi_py37hd308b1e_100
- hdf5=1.12.1=nompi_h2750804_103
- icu=69.1=h9c3ff4c_0
- igraph=0.9.6=ha184e22_0
- importlib-metadata=4.10.1=py37h89c1867_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- ipykernel=6.7.0=py37h6531663_0
- ipython=7.31.1=py37h89c1867_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.6.5=pyhd8ed1ab_0
- jbig=2.1=h7f98852_2003
- jedi=0.18.1=py37h89c1867_0
- jinja2=3.0.3=pyhd8ed1ab_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- jsonschema=4.4.0=pyhd8ed1ab_0
- jupyter=1.0.0=py37h89c1867_7
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_console=6.4.0=pyhd8ed1ab_0
- jupyter_core=4.9.1=py37h89c1867_1
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_widgets=1.0.2=pyhd8ed1ab_0
- kiwisolver=1.3.2=py37h2527ec5_1
- krb5=1.19.2=hcc1bbae_3
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- leidenalg=0.8.8=py37hcd2ae1e_1
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libclang=13.0.0=default_hc23dcda_0
- libcurl=7.81.0=h2574ce0_0
- libdeflate=1.8=h7f98852_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libglib=2.70.2=h174f98d_1
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=13_linux64_openblas
- libllvm11=11.1.0=hf817b99_2
- libllvm13=13.0.0=hf817b99_0
- libnghttp2=1.43.0=h812cca2_1
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=h21135ba_2
- libpq=14.1=hd57d9b9_1
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.3.0=h6f004c6_2
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- llvmlite=0.38.0=py37h9d7f4d0_0
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- markupsafe=2.0.1=py37h5e8e339_1
- matplotlib=3.3.2=0
- matplotlib-base=3.3.2=py37h4f6019d_1
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- metis=5.1.0=h58526e2_1006
- mistune=0.8.4=py37h5e8e339_1005
- mock=4.0.3=py37h89c1867_2
- mpfr=4.1.0=h9202a9a_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.28=ha770c72_0
- mysql-libs=8.0.28=hfa10184_0
- nbclient=0.5.10=pyhd8ed1ab_1
- nbconvert=6.4.0=py37h89c1867_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.3=h9c3ff4c_0
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- notebook=6.4.7=pyha770c72_0
- nspr=4.32=h9c3ff4c_1
- nss=3.74=hb5efdd6_0
- numba=0.55.0=py37h2d894fd_0
- numexpr=2.8.0=py37hfe5f03c_100
- numpy=1.21.5=py37hf2998dd_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1l=h7f98852_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.3.5=py37h8c16a72_0
- pandoc=2.17.0.1=h7f98852_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.2=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.4.0=py37h0f21c89_0
- pip=21.3.1=pyhd8ed1ab_0
- prometheus_client=0.12.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.24=pyha770c72_0
- prompt_toolkit=3.0.24=hd8ed1ab_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pyqt=5.12.3=py37h89c1867_8
- pyqt-impl=5.12.3=py37hac37412_8
- pyqt5-sip=4.19.18=py37hcd2ae1e_8
- pyqtchart=5.12=py37he336c9b_8
- pyqtwebengine=5.12.1=py37he336c9b_8
- pyrsistent=0.18.1=py37h5e8e339_0
- pytables=3.6.1=py37h5dea08b_5
- python=3.7.12=hb7a2778_100_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-igraph=0.9.9=py37h6c76e3a_0
- python_abi=3.7=2_cp37m
- pytz=2021.3=pyhd8ed1ab_0
- pyzmq=22.3.0=py37h336d617_1
- qt=5.12.9=ha98a1a1_5
- qtconsole=5.2.2=pyhd8ed1ab_1
- qtconsole-base=5.2.2=pyhd8ed1ab_1
- qtpy=2.0.0=pyhd8ed1ab_0
- readline=8.1=h46c0cb4_0
- scikit-learn=1.0.2=py37hf9e9bfc_0
- scipy=1.7.3=py37hf2a6cf1_0
- seaborn=0.11.2=hd8ed1ab_0
- seaborn-base=0.11.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=60.5.0=py37h89c1867_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.37.0=h9cd32fc_0
- statsmodels=0.13.1=py37hb1e94ed_0
- suitesparse=5.10.1=h9e50725_1
- tbb=2021.5.0=h4bd325d_0
- terminado=0.12.1=py37h89c1867_1
- testpath=0.5.0=pyhd8ed1ab_0
- texttable=1.6.4=pyhd8ed1ab_0
- threadpoolctl=3.0.0=pyh8a188c0_0
- tk=8.6.11=h27826a3_1
- tornado=6.1=py37h5e8e339_2
- traitlets=5.1.1=pyhd8ed1ab_0
- typing_extensions=4.0.1=pyha770c72_0
- unicodedata2=14.0.0=py37h5e8e339_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.37.1=pyhd8ed1ab_0
- widgetsnbextension=3.5.2=py37h89c1867_1
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.5=h516909a_1
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.7.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
- pip:
- anndata==0.7.8
- cellrank==1.5.1
- docrep==0.3.2
- future==0.18.2
- loompy==3.0.6
- natsort==8.0.2
- networkx==2.6.3
- numpy-groupies==0.9.14
- progressbar2==4.0.0
- pygam==0.8.0
- pygpcca==1.0.3
- pynndescent==0.5.6
- pysam==0.18.0
- python-utils==3.1.0
- scanpy==1.8.2
- scvelo==0.2.4
- sinfo==0.3.4
- stdlib-list==0.8.0
- tqdm==4.62.3
- umap-learn==0.5.2
- velocyto==0.17.17
- wrapt==1.13.3
- xlrd==1.2.0