diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html index 33df366..d361bd5 100644 --- a/docs/articles/introduction.html +++ b/docs/articles/introduction.html @@ -651,6 +651,169 @@

## DONE!

From now on, only the scPred models can be imported and applied to other query Seurat objects/datasets.

+ +
+

+Session information

+
options(width = 120)
+devtools::session_info()
+
## Registered S3 method overwritten by 'cli':
+##   method     from    
+##   print.boxx spatstat
+
## ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
+##  setting  value                       
+##  version  R version 4.0.2 (2020-06-22)
+##  os       macOS Catalina 10.15.6      
+##  system   x86_64, darwin17.0          
+##  ui       X11                         
+##  language (EN)                        
+##  collate  en_AU.UTF-8                 
+##  ctype    en_AU.UTF-8                 
+##  tz       Australia/Sydney            
+##  date     2020-09-14                  
+## 
+## ─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
+##  package        * version    date       lib source                                 
+##  abind            1.4-5      2016-07-21 [2] CRAN (R 4.0.0)                         
+##  ape              5.4-1      2020-08-13 [2] CRAN (R 4.0.2)                         
+##  assertthat       0.2.1      2019-03-21 [2] CRAN (R 4.0.0)                         
+##  backports        1.1.9      2020-08-24 [2] CRAN (R 4.0.2)                         
+##  beeswarm         0.2.3      2016-04-25 [2] CRAN (R 4.0.0)                         
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+##  class            7.3-17     2020-04-26 [2] CRAN (R 4.0.2)                         
+##  cli              2.0.2      2020-02-28 [2] CRAN (R 4.0.0)                         
+##  cluster          2.1.0      2019-06-19 [2] CRAN (R 4.0.2)                         
+##  codetools        0.2-16     2018-12-24 [2] CRAN (R 4.0.2)                         
+##  colorspace       1.4-1      2019-03-18 [2] CRAN (R 4.0.0)                         
+##  cowplot          1.0.0      2019-07-11 [2] CRAN (R 4.0.0)                         
+##  crayon           1.3.4      2017-09-16 [2] CRAN (R 4.0.0)                         
+##  data.table       1.13.0     2020-07-24 [2] CRAN (R 4.0.2)                         
+##  deldir           0.1-28     2020-07-15 [2] CRAN (R 4.0.1)                         
+##  desc             1.2.0      2018-05-01 [2] CRAN (R 4.0.0)                         
+##  devtools         2.3.1      2020-07-21 [2] CRAN (R 4.0.2)                         
+##  digest           0.6.25     2020-02-23 [2] CRAN (R 4.0.0)                         
+##  doParallel     * 1.0.15     2019-08-02 [2] CRAN (R 4.0.0)                         
+##  dplyr            1.0.2      2020-08-18 [2] CRAN (R 4.0.2)                         
+##  ellipsis         0.3.1      2020-05-15 [2] CRAN (R 4.0.0)                         
+##  evaluate         0.14       2019-05-28 [2] CRAN (R 4.0.0)                         
+##  fansi            0.4.1      2020-01-08 [2] CRAN (R 4.0.0)                         
+##  fastmap          1.0.1      2019-10-08 [2] CRAN (R 4.0.0)                         
+##  fitdistrplus     1.1-1      2020-05-19 [2] CRAN (R 4.0.0)                         
+##  foreach        * 1.5.0      2020-03-30 [2] CRAN (R 4.0.0)                         
+##  fs               1.5.0      2020-07-31 [2] CRAN (R 4.0.2)                         
+##  future           1.18.0     2020-07-09 [2] CRAN (R 4.0.1)                         
+##  future.apply     1.6.0      2020-07-01 [2] CRAN (R 4.0.1)                         
+##  generics         0.0.2      2018-11-29 [2] CRAN (R 4.0.0)                         
+##  ggbeeswarm       0.6.0      2017-08-07 [2] CRAN (R 4.0.2)                         
+##  ggplot2        * 3.3.2      2020-06-19 [2] CRAN (R 4.0.1)                         
+##  ggrepel          0.8.2      2020-03-08 [2] CRAN (R 4.0.0)                         
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+##  gtable           0.3.0      2019-03-25 [2] CRAN (R 4.0.0)                         
+##  harmony          1.0        2020-06-25 [2] Github (immunogenomics/harmony@88b1e2a)
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+##  Matrix           1.2-18     2019-11-27 [2] CRAN (R 4.0.2)                         
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+##  miniUI           0.1.1.1    2018-05-18 [2] CRAN (R 4.0.0)                         
+##  ModelMetrics     1.2.2.2    2020-03-17 [2] CRAN (R 4.0.0)                         
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+##  pkgconfig        2.0.3      2019-09-22 [2] CRAN (R 4.0.0)                         
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+##  pkgload          1.1.0      2020-05-29 [2] CRAN (R 4.0.0)                         
+##  plotly           4.9.2.1    2020-04-04 [2] CRAN (R 4.0.0)                         
+##  plyr             1.8.6      2020-03-03 [2] CRAN (R 4.0.0)                         
+##  png              0.1-7      2013-12-03 [2] CRAN (R 4.0.0)                         
+##  polyclip         1.10-0     2019-03-14 [2] CRAN (R 4.0.0)                         
+##  prettyunits      1.1.1      2020-01-24 [2] CRAN (R 4.0.0)                         
+##  pROC             1.16.2     2020-03-19 [2] CRAN (R 4.0.0)                         
+##  processx         3.4.4      2020-09-03 [2] CRAN (R 4.0.2)                         
+##  prodlim          2019.11.13 2019-11-17 [2] CRAN (R 4.0.0)                         
+##  promises         1.1.1      2020-06-09 [2] CRAN (R 4.0.0)                         
+##  ps               1.3.4      2020-08-11 [2] CRAN (R 4.0.2)                         
+##  purrr            0.3.4      2020-04-17 [2] CRAN (R 4.0.0)                         
+##  R6               2.4.1      2019-11-12 [2] CRAN (R 4.0.0)                         
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+##  scales           1.1.1      2020-05-11 [2] CRAN (R 4.0.0)                         
+##  scPred         * 1.9.0      2020-09-13 [1] Bioconductor                           
+##  sctransform      0.2.1      2019-12-17 [2] CRAN (R 4.0.0)                         
+##  sessioninfo      1.1.1      2018-11-05 [2] CRAN (R 4.0.0)                         
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+##  shiny            1.5.0      2020-06-23 [2] CRAN (R 4.0.1)                         
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+##  zoo              1.8-8      2020-05-02 [2] CRAN (R 4.0.0)                         
+## 
+## [1] /private/var/folders/6y/nzcvsw7j5dn1g0k8b13x086w0000gp/T/Rtmp6zp1Tb/temp_libpathc23ed96b965
+## [2] /Library/Frameworks/R.framework/Versions/4.0/Resources/library
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 6f45818..43a4e24 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 1.5.1 pkgdown_sha: ~ articles: introduction: introduction.html -last_built: 2020-09-13T17:25Z +last_built: 2020-09-13T18:26Z diff --git a/vignettes/introduction.Rmd b/vignettes/introduction.Rmd index 07afcc1..6c9aca3 100644 --- a/vignettes/introduction.Rmd +++ b/vignettes/introduction.Rmd @@ -364,3 +364,12 @@ query <- scPredict(query, scpred) From now on, only the `scPred` models can be imported and applied to other query `Seurat` objects/datasets. + + +# Session information + +```{r} +options(width = 120) +devtools::session_info() +``` +