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run-adaptivity-test.yml
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name: Test for functions in classes AdaptivityCalculator, LocalAdaptivityCalculator, GlobalAdaptivityCalculator
on:
push:
branches:
- main
- develop
pull_request:
branches:
- "*"
jobs:
adaptivity_integration_tests:
name: Run adaptivity integration tests
runs-on: ubuntu-latest
container: precice/precice:develop
steps:
- name: Checkout repository
uses: actions/checkout@v3
with:
path: micro-manager
- name: Install dependencies
working-directory: micro-manager
run: |
apt-get -qq update
apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
python -m pip install --upgrade pip
pip install setuptools wheel
- name: Install Micro Manager
working-directory: micro-manager
run: pip3 install --user .
- name: Run integration test with local adaptivity
timeout-minutes: 3
working-directory: micro-manager/tests/integration/test_unit_cube
run: |
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
python3 unit_cube.py & python3 run_micro_manager.py --config micro-manager-config-local-adaptivity.json
- name: Run integration test with global adaptivity
timeout-minutes: 3
working-directory: micro-manager/tests/integration/test_unit_cube
run: |
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
python3 unit_cube.py & python3 run_micro_manager.py --config micro-manager-config-global-adaptivity.json
adaptivity_unit_tests_serial:
name: Run adaptivity unit tests in serial
runs-on: ubuntu-latest
container: precice/precice:develop
steps:
- name: Checkout Repository
uses: actions/checkout@v3
with:
path: micro-manager
- name: Install Dependencies
working-directory: micro-manager
run: |
apt-get -qq update
apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
python -m pip install --upgrade pip
pip install setuptools wheel
- name: Install Micro Manager
working-directory: micro-manager
run: pip3 install --user .
- name: Run unit tests
working-directory: micro-manager/tests/unit
run: python3 -m unittest test_adaptivity_serial.py
adaptivity_unit_tests_parallel:
name: Run adaptivity unit tests in parallel
runs-on: ubuntu-latest
container: precice/precice:develop
steps:
- name: Checkout Repository
uses: actions/checkout@v3
with:
path: micro-manager
- name: Install sudo for MPI
working-directory: micro-manager
run: |
apt-get -qq update
apt-get -qq install sudo
- name: Use mpi4py
uses: mpi4py/setup-mpi@v1
- name: Install Dependencies
working-directory: micro-manager
run: |
apt-get -qq update
apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
python -m pip install --upgrade pip
pip install setuptools wheel twine
- name: Install Micro Manager
working-directory: micro-manager
run: pip3 install --user .
- name: Run unit tests
working-directory: micro-manager/tests/unit
run: mpiexec -n 2 --allow-run-as-root python3 -m unittest test_adaptivity_parallel.py