diff --git a/modelscan/cli.py b/modelscan/cli.py
index db93869..1005b8d 100644
--- a/modelscan/cli.py
+++ b/modelscan/cli.py
@@ -129,7 +129,7 @@ def scan(
         if not pathlibPath.exists():
             raise FileNotFoundError(f"Path {path} does not exist")
         else:
-            modelscan.scan(pathlibPath)
+            modelscan.scan(path)
     else:
         raise click.UsageError("Command line must include a path")
 
diff --git a/modelscan/modelscan.py b/modelscan/modelscan.py
index 2fec531..fe43206 100644
--- a/modelscan/modelscan.py
+++ b/modelscan/modelscan.py
@@ -68,8 +68,8 @@ def scan(
         self._skipped = []
         self._scanned = []
         self._input_path = str(path)
-
-        self._scan_path(Path(path))
+        pathlibPath = Path().cwd() if path == "." else Path(path).absolute()
+        self._scan_path(Path(pathlibPath))
         return self._generate_results()
 
     def _scan_path(
@@ -138,6 +138,10 @@ def _scan_zip(
     def _generate_results(self) -> Dict[str, Any]:
         report: Dict[str, Any] = {}
 
+        absolute_path = Path(self._input_path).resolve()
+        if Path(self._input_path).is_file():
+            absolute_path = Path(absolute_path).parent
+
         issues_by_severity = self._issues.group_by_severity()
         total_issue_count = len(self._issues.all_issues)
 
@@ -151,22 +155,30 @@ def _generate_results(self) -> Dict[str, Any]:
                 report["summary"]["total_issues_by_severity"][severity.name] = 0
 
         report["summary"]["total_issues"] = total_issue_count
-        report["summary"]["input_path"] = self._input_path
+        report["summary"]["input_path"] = str(self._input_path)
+        report["summary"]["absolute_path"] = str(absolute_path)
         report["summary"]["modelscan_version"] = __version__
         report["summary"]["timestamp"] = datetime.now().isoformat()
         report["summary"]["skipped"] = {"total_skipped": len(self._skipped)}
         report["summary"]["skipped"]["skipped_files"] = [
-            str(file_name) for file_name in self._skipped
+            str(Path(file_name).relative_to(Path(absolute_path)))
+            for file_name in self._skipped
         ]
         report["summary"]["scanned"] = {"total_scanned": len(self._scanned)}
         report["summary"]["scanned"]["scanned_files"] = [
-            str(file_name) for file_name in self._scanned
+            str(Path(file_name).relative_to(Path(absolute_path)))
+            for file_name in self._scanned
         ]
 
         report["issues"] = [
             issue.details.output_json() for issue in self._issues.all_issues
         ]
 
+        for issue in report["issues"]:
+            issue["source"] = str(
+                Path(issue["source"]).relative_to(Path(absolute_path))
+            )
+
         report["errors"] = [str(error) for index, error in enumerate(self._errors)]
 
         return report