hasta.config

// Profile config names for nf-core/configs
params {
    config_profile_description = 'Hasta, a local cluster setup at Clinical Genomics, Stockholm.'
    config_profile_contact = 'Clinical Genomics, Stockholm'
    config_profile_url = 'https://github.com/Clinical-Genomics'
    priority = null
    clusterOptions = null
    schema_ignore_params = "priority,clusterOptions"
    validationSchemaIgnoreParams = "priority,clusterOptions,schema_ignore_params"
}

singularity {
    enabled = true
    envWhitelist = ['_JAVA_OPTIONS']
}

params {
    max_memory = 180.GB
    max_cpus   = 36
    max_time   = 336.h
}

process {
    executor = 'slurm'
    clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" }
}

profiles {
    stub_prio {
        params {
            priority = 'development'
            clusterOptions = "--qos=low"
            max_memory = 6.GB
            max_cpus   = 1
            max_time   = 1.h
        }
    }

    dev_prio {
        params {
            priority = 'development'
            clusterOptions = "--qos=low"
        }
    }

    prod_prio {
        params {
            priority = 'production'
            clusterOptions = "--qos=low"
        }
    }
}