ci.yaml

name: CI

on: [push, pull_request]

env:
  CACHE_NUMBER: 1

jobs:
  test:
    runs-on: ${{ matrix.os }}
    continue-on-error: ${{ matrix.experimental }}
    strategy:
      fail-fast: true
      matrix:
        os: ["windows-latest", "ubuntu-latest", "macos-latest"]
        python-version: ["3.9", "3.10", "3.11"]
        experimental: [false]
        include:
          - python-version: "3.11"
            os: "ubuntu-latest"
            experimental: true

    env:
      PYTHON_VERSION: ${{ matrix.python-version }}
      OS: ${{ matrix.os }}
      UNSTABLE: ${{ matrix.experimental }}
      ACTIONS_ALLOW_UNSECURE_COMMANDS: true

    steps:
      - name: Checkout source
        uses: actions/checkout@v4

      - name: Setup Conda Environment
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          use-mamba: true
          python-version: ${{ matrix.python-version }}
          activate-environment: test-environment

      - name: Set cache environment variables
        shell: bash -l {0}
        run: |
          echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV
          CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)")
          echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV

      - uses: actions/cache@v4
        with:
          path: ${{ env.CONDA_PREFIX }}
          key: ${{ matrix.os }}-${{matrix.python-version}}-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{matrix.experimental}}-${{ env.CACHE_NUMBER }}
        id: cache

      - name: Update environment
        run: mamba env update -n test-environment -f continuous_integration/environment.yaml
        if: steps.cache.outputs.cache-hit != 'true'

      - name: Install unstable dependencies
        if: matrix.experimental == true
        shell: bash -l {0}
        # We must get LD_PRELOAD for stdlibc++ or else the manylinux wheels
        # may break the conda-forge libraries trying to use newer glibc versions
        run: |
          python -m pip install \
          --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple/ \
          --trusted-host pypi.anaconda.org \
          --no-deps --pre --upgrade \
          matplotlib \
          numpy \
          pandas \
          scipy; \
          python -m pip install \
          --no-deps --upgrade \
          git+https://github.com/dask/dask \
          git+https://github.com/pydata/xarray;
          LD_PRELOAD=$(python -c "import sys; print(sys.prefix)")/lib/libstdc++.so
          echo "LD_PRELOAD=${LD_PRELOAD}" >> $GITHUB_ENV

      - name: Install Pyorbital
        shell: bash -l {0}
        run: |
          python -m pip install --no-deps -e .

      - name: Run unit tests
        shell: bash -l {0}
        run: |
          export LD_PRELOAD=${{ env.LD_PRELOAD }};
          pytest --cov=pyorbital pyorbital/tests --cov-report=xml --cov-report=

      - name: Upload unittest coverage to Codecov
        uses: codecov/codecov-action@v3
        with:
          flags: unittests
          file: ./coverage.xml
          env_vars: OS,PYTHON_VERSION,UNSTABLE

      - name: Coveralls Parallel
        uses: AndreMiras/coveralls-python-action@develop
        with:
          flag-name: run-${{ matrix.test_number }}
          parallel: true
        if: runner.os == 'Linux'

  coveralls:
    needs: [test]
    runs-on: ubuntu-latest
    steps:
      - name: Coveralls Finished
        uses: AndreMiras/coveralls-python-action@develop
        with:
          parallel-finished: true