From f790e8a55a058b78ce2b364309752e2eb5023375 Mon Sep 17 00:00:00 2001
From: q2d2 <q2d2.noreply@gmail.com>
Date: Sun, 15 Dec 2024 02:01:18 +0000
Subject: [PATCH 1/2] Automated updates to seed environment: tiny

---
 2025.4/tiny/passed/seed-environment-conda.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/2025.4/tiny/passed/seed-environment-conda.yml b/2025.4/tiny/passed/seed-environment-conda.yml
index 1e021b43..248f373a 100644
--- a/2025.4/tiny/passed/seed-environment-conda.yml
+++ b/2025.4/tiny/passed/seed-environment-conda.yml
@@ -27,3 +27,4 @@ dependencies:
 extras:
   variant_override:
     qiime2_epoch: '2025.4'
+# modified: 2024-12-15

From cfdc64c79789591049805f6fe90d25edae7da325 Mon Sep 17 00:00:00 2001
From: q2d2 <q2d2.noreply@gmail.com>
Date: Sun, 15 Dec 2024 03:10:45 +0000
Subject: [PATCH 2/2] Update conda environments
 (Prepare-2025.4/tiny/2024-12-15)

---
 .../passed/qiime2-tiny-macos-latest-conda.yml | 12 ++--
 .../qiime2-tiny-ubuntu-latest-conda.yml       | 64 +++++++++----------
 2025.4/tiny/passed/seed-environment-conda.yml |  3 +-
 2025.4/tiny/staged/seed-environment-conda.yml |  2 +-
 4 files changed, 38 insertions(+), 43 deletions(-)

diff --git a/2025.4/tiny/passed/qiime2-tiny-macos-latest-conda.yml b/2025.4/tiny/passed/qiime2-tiny-macos-latest-conda.yml
index 960fd909..f12780a4 100644
--- a/2025.4/tiny/passed/qiime2-tiny-macos-latest-conda.yml
+++ b/2025.4/tiny/passed/qiime2-tiny-macos-latest-conda.yml
@@ -19,10 +19,10 @@ dependencies:
 - biom-format=2.1.15
 - bleach=6.2.0
 - brotli-python=1.1.0
-- bwidget=1.9.14
+- bwidget=1.10.1
 - bzip2=1.0.8
-- c-ares=1.34.3
-- ca-certificates=2024.8.30
+- c-ares=1.34.4
+- ca-certificates=2024.12.14
 - cached-property=1.5.2
 - cached_property=1.5.2
 - cairo=1.18.0
@@ -45,7 +45,7 @@ dependencies:
 - conda-pack=0.7.0
 - cryptography=44.0.0
 - curl=8.8.0
-- debugpy=1.8.9
+- debugpy=1.8.11
 - decorator=4.4.2
 - defusedxml=0.7.1
 - dill=0.3.9
@@ -178,7 +178,7 @@ dependencies:
 - pexpect=4.9.0
 - pickleshare=0.7.5
 - pip=24.3.1
-- pixman=0.43.4
+- pixman=0.44.2
 - pkgutil-resolve-name=1.3.10
 - platformdirs=4.3.6
 - pluggy=1.5.0
@@ -211,7 +211,7 @@ dependencies:
 - q2-types=2025.4.0.dev0
 - q2cli=2025.4.0.dev0+1.g0ac7869
 - q2templates=2025.4.0.dev0
-- qiime2=2025.4.0.dev0+4.ge8e66ba
+- qiime2=2025.4.0.dev0+5.gdb970dd
 - r-base=4.3.3
 - r-here=1.0.1
 - r-jsonlite=1.8.9
diff --git a/2025.4/tiny/passed/qiime2-tiny-ubuntu-latest-conda.yml b/2025.4/tiny/passed/qiime2-tiny-ubuntu-latest-conda.yml
index 744dc91a..668607ed 100644
--- a/2025.4/tiny/passed/qiime2-tiny-ubuntu-latest-conda.yml
+++ b/2025.4/tiny/passed/qiime2-tiny-ubuntu-latest-conda.yml
@@ -21,13 +21,13 @@ dependencies:
 - biom-format=2.1.15
 - bleach=6.2.0
 - brotli-python=1.1.0
-- bwidget=1.9.14
+- bwidget=1.10.1
 - bzip2=1.0.8
-- c-ares=1.34.3
-- ca-certificates=2024.8.30
+- c-ares=1.34.4
+- ca-certificates=2024.12.14
 - cached-property=1.5.2
 - cached_property=1.5.2
-- cairo=1.18.0
+- cairo=1.18.2
 - certifi=2024.8.30
 - cffi=1.17.1
 - charset-normalizer=3.4.0
@@ -36,22 +36,21 @@ dependencies:
 - comm=0.2.2
 - conda-pack=0.7.0
 - cryptography=44.0.0
-- curl=8.8.0
-- debugpy=1.8.9
+- curl=8.11.1
+- debugpy=1.8.11
 - decorator=4.4.2
 - defusedxml=0.7.1
 - dill=0.3.9
 - entrypoints=0.4
 - exceptiongroup=1.2.2
 - executing=2.1.0
-- expat=2.6.4
 - filelock=3.16.1
 - flufl.lock=8.1.0
 - font-ttf-dejavu-sans-mono=2.37
 - font-ttf-inconsolata=3.000
 - font-ttf-source-code-pro=2.038
 - font-ttf-ubuntu=0.83
-- fontconfig=2.14.2
+- fontconfig=2.15.0
 - fonts-conda-ecosystem=1
 - fonts-conda-forge=1
 - fqdn=1.5.1
@@ -61,6 +60,7 @@ dependencies:
 - gfortran_impl_linux-64=14.2.0
 - globus-sdk=3.49.0
 - graphite2=1.3.13
+- gsl=2.7
 - gxx_impl_linux-64=14.2.0
 - h2=4.1.0
 - h5py=3.11.0
@@ -70,7 +70,7 @@ dependencies:
 - hpack=4.0.0
 - htslib=1.21
 - hyperframe=6.0.1
-- icu=73.2
+- icu=75.1
 - idna=3.10
 - ijson=3.3.0
 - importlib-metadata=8.5.0
@@ -102,8 +102,8 @@ dependencies:
 - libaec=1.1.3
 - libblas=3.9.0
 - libcblas=3.9.0
-- libcurl=8.8.0
-- libdeflate=1.20
+- libcurl=8.11.1
+- libdeflate=1.22
 - libedit=3.1.20191231
 - libev=4.33
 - libexpat=2.6.4
@@ -114,7 +114,7 @@ dependencies:
 - libgfortran=14.2.0
 - libgfortran-ng=14.2.0
 - libgfortran5=14.2.0
-- libglib=2.80.2
+- libglib=2.82.2
 - libgomp=14.2.0
 - libiconv=1.17
 - libjpeg-turbo=3.0.0
@@ -122,26 +122,26 @@ dependencies:
 - liblapacke=3.9.0
 - liblzma=5.6.3
 - liblzma-devel=5.6.3
-- libnghttp2=1.58.0
+- libnghttp2=1.64.0
 - libnsl=2.0.1
 - libopenblas=0.3.28
-- libpng=1.6.43
+- libpng=1.6.44
 - libsanitizer=14.2.0
 - libsodium=1.0.18
-- libsqlite=3.46.0
-- libssh2=1.11.0
+- libsqlite=3.47.2
+- libssh2=1.11.1
 - libstdcxx=14.2.0
 - libstdcxx-devel_linux-64=14.2.0
 - libstdcxx-ng=14.2.0
-- libtiff=4.6.0
+- libtiff=4.7.0
 - libuuid=2.38.1
 - libwebp-base=1.4.0
-- libxcb=1.15
+- libxcb=1.17.0
 - libxcrypt=4.4.36
-- libxml2=2.12.7
+- libxml2=2.13.5
 - libxslt=1.1.39
-- libzlib=1.2.13
-- lxml=5.2.2
+- libzlib=1.3.1
+- lxml=5.3.0
 - lz4=4.3.3
 - lz4-c=1.10.0
 - make=4.4.1
@@ -169,11 +169,11 @@ dependencies:
 - paramiko=3.5.0
 - parsl=2024.4.15
 - parso=0.8.4
-- pcre2=10.43
+- pcre2=10.44
 - pexpect=4.9.0
 - pickleshare=0.7.5
 - pip=24.3.1
-- pixman=0.43.2
+- pixman=0.44.2
 - pkgutil-resolve-name=1.3.10
 - platformdirs=4.3.6
 - pluggy=1.5.0
@@ -191,7 +191,7 @@ dependencies:
 - pyparsing=3.2.0
 - pysocks=1.7.1
 - pytest=8.3.4
-- python=3.10.14
+- python=3.10.16
 - python-dateutil=2.9.0.post0
 - python-fastjsonschema=2.21.1
 - python-json-logger=2.0.7
@@ -205,7 +205,7 @@ dependencies:
 - q2-types=2025.4.0.dev0
 - q2cli=2025.4.0.dev0+1.g0ac7869
 - q2templates=2025.4.0.dev0
-- qiime2=2025.4.0.dev0+4.ge8e66ba
+- qiime2=2025.4.0.dev0+5.gdb970dd
 - r-base=4.3.3
 - r-here=1.0.1
 - r-jsonlite=1.8.9
@@ -264,24 +264,20 @@ dependencies:
 - webencodings=0.5.1
 - websocket-client=1.8.0
 - wheel=0.45.1
-- xorg-kbproto=1.0.7
-- xorg-libice=1.1.1
+- xorg-libice=1.1.2
 - xorg-libsm=1.2.4
-- xorg-libx11=1.8.9
+- xorg-libx11=1.8.10
 - xorg-libxau=1.0.11
 - xorg-libxdmcp=1.1.5
-- xorg-libxext=1.3.4
+- xorg-libxext=1.3.6
 - xorg-libxrender=0.9.11
-- xorg-libxt=1.3.0
-- xorg-renderproto=0.11.1
-- xorg-xextproto=7.3.0
-- xorg-xproto=7.0.31
+- xorg-libxt=1.3.1
 - xz=5.6.3
 - xz-gpl-tools=5.6.3
 - xz-tools=5.6.3
 - yaml=0.2.5
 - zeromq=4.3.5
 - zipp=3.21.0
-- zlib=1.2.13
+- zlib=1.3.1
 - zstandard=0.23.0
 - zstd=1.5.6
diff --git a/2025.4/tiny/passed/seed-environment-conda.yml b/2025.4/tiny/passed/seed-environment-conda.yml
index 248f373a..662560f6 100644
--- a/2025.4/tiny/passed/seed-environment-conda.yml
+++ b/2025.4/tiny/passed/seed-environment-conda.yml
@@ -16,7 +16,7 @@ dependencies:
 - q2-types=2025.4.0.dev0
 - q2cli=2025.4.0.dev0+1.g0ac7869
 - q2templates=2025.4.0.dev0
-- qiime2=2025.4.0.dev0+4.ge8e66ba
+- qiime2=2025.4.0.dev0+5.gdb970dd
 - r-base=4.3.3
 - r-reticulate=1.36.0
 - scikit-bio=0.6.0
@@ -27,4 +27,3 @@ dependencies:
 extras:
   variant_override:
     qiime2_epoch: '2025.4'
-# modified: 2024-12-15
diff --git a/2025.4/tiny/staged/seed-environment-conda.yml b/2025.4/tiny/staged/seed-environment-conda.yml
index 82969bae..4a01fc0e 100644
--- a/2025.4/tiny/staged/seed-environment-conda.yml
+++ b/2025.4/tiny/staged/seed-environment-conda.yml
@@ -17,7 +17,7 @@ dependencies:
 - q2-types=2025.4.0.dev0
 - q2cli=2025.4.0.dev0+1.g0ac7869
 - q2templates=2025.4.0.dev0
-- qiime2=2025.4.0.dev0+4.ge8e66ba
+- qiime2=2025.4.0.dev0+5.gdb970dd
 - r-base=4.3.3
 - r-reticulate=1.36.0
 - scikit-bio=0.6.0